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Report for CCDS34968.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34968.2 Public Homo sapiens 8 TONSL 24 110 108 CCDS HistoryNCBI Gene:4796Re-query CCDS DB by CCDS ID:34968.2See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 34968.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 34968.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409379.8 ENSP00000386239.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409379.8Link to Ensembl Protein Viewer:ENSP00000386239.3Re-query CCDS DB by Nucleotide ID:ENST00000409379Re-query CCDS DB by Protein ID:ENSP00000386239
Original member Current member NCBI NM_013432.5 NP_038460.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013432.5Link to Protein Sequence:NP_038460.4Re-query CCDS DB by Nucleotide ID:NM_013432Re-query CCDS DB by Protein ID:NP_038460Link to BLAST:NP_038460.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038460.4 1378 Q96HA7-1 1378 100% 0 0

Chromosomal Locations for CCDS 34968.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144429143 144429336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144430404 144430537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144431078 144431151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144432285 144432460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144433588 144433759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144433978 144434279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144434811 144434889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144435017 144435170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144435474 144435550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144435658 144436418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144436558 144436681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144436757 144436920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144437027 144437099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144438471 144438560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144438653 144438735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144440021 144440210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144440351 144440476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144440718 144440870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144440966 144441111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144442037 144442151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144442241 144442412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144442677 144442806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144443138 144443321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144443882 144444024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144444180 144444275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144444390 144444414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4137 nt):
ATGAGCCTGGAGCGCGAGCTTCGCCAGCTGAGCAAGGCGAAAGCCAAGGCGCAGAGGGCCGGGCAGCGGC
GCGAAGAGGCCGCGCTGTGCCACCAGCTGGGGGAGCTCCTGGCCGGCCATGGCCGCTACGCCGAGGCTCT
GGAGCAGCACTGGCAGGAGCTGCAGCTTCGGGAGCGCGCTGACGACCCTCTGGGCTGTGCCGTGGCCCAC
CGCAAGATCGGAGAGCGCCTGGCCGAGATGGAGGACTACCCGGCTGCCTTGCAGCACCAGCACCAGTACC
TGGAGCTGGCACATTCCCTGCGCAACCACACGGAGCTGCAGAGGGCCTGGGCCACCATCGGCCGCACCCA
CCTGGACATCTATGACCACTGCCAGTCGAGGGATGCTTTGCTGCAGGCACAGGCTGCCTTTGAGAAGAGC
TTGGCTATTGTGGATGAGGAGCTGGAGGGGACACTGGCCCAGGGAGAGCTGAATGAGATGAGGACCCGCC
TCTATCTCAACCTGGGCCTCACCTTTGAGAGCCTGCAGCAGACAGCCCTGTGCAACGATTACTTCAGGAA
GAGCATCTTCCTTGCGGAGCAGAACCACCTTTACGAGGACCTATTCCGCGCCCGCTACAACCTGGGCACC
ATCCACTGGCGCGCGGGCCAGCACTCCCAGGCTATGCGCTGCTTGGAGGGTGCCCGGGAGTGTGCGCACA
CCATGAGGAAGCGGTTCATGGAGAGCGAGTGCTGCGTGGTTATTGCACAGGTCCTCCAAGACCTGGGAGA
CTTTTTGGCTGCCAAGCGAGCCCTGAAGAAGGCCTACAGGCTGGGCTCCCAGAAGCCTGTGCAGAGGGCA
GCCATCTGTCAGAACCTCCAGCATGTGCTGGCAGTGGTCCGGCTGCAGCAACAGCTGGAAGAGGCTGAGG
GCAGAGACCCTCAGGGTGCCATGGTCATCTGTGAGCAGCTAGGGGACCTCTTCTCCAAGGCAGGAGACTT
TCCCAGGGCAGCTGAGGCTTACCAGAAGCAGCTGCGTTTTGCTGAGCTGCTGGACAGACCGGGTGCTGAG
CGGGCCATCATCCACGTGTCCCTGGCCACCACACTGGGAGACATGAAGGACCACCATGGGGCCGTGCGCC
ACTATGAGGAGGAACTGAGGCTGCGCAGCGGCAACGTGCTGGAGGAGGCCAAGACCTGGCTGAACATTGC
ACTGTCCCGCGAGGAGGCCGGCGATGCCTACGAGCTGCTGGCCCCGTGCTTCCAGAAAGCGCTCAGCTGT
GCCCAGCAGGCCCAGCGTCCCCAGCTGCAGAGGCAGGTCTTGCAGCATCTCCATACCGTGCAGCTGAGGC
TGCAGCCCCAGGAGGCCCCTGAGACCGAAACCAGACTACGGGAGCTCAGTGTAGCTGAAGATGAAGATGA
GGAGGAGGAGGCGGAGGAGGCGGCAGCCACAGCGGAGAGCGAAGCCCTGGAGGCCGGCGAGGTGGAGCTC
TCAGAGGGCGAGGACGACACCGATGGCCTGACCCCGCAGCTGGAGGAGGACGAGGAGCTTCAGGGCCACC
TGGGCCGGCGGAAGGGGAGCAAGTGGAACCGGCGAAACGACATGGGGGAGACCCTGCTGCACCGAGCCTG
CATCGAGGGCCAGCTGCGCCGCGTCCAGGACCTTGTGAGGCAGGGCCACCCCCTTAACCCTCGGGACTAC
TGTGGCTGGACACCTCTGCACGAGGCCTGCAACTACGGGCATCTAGAAATTGTCCGCTTCCTGCTGGACC
ACGGGGCCGCAGTGGACGACCCAGGTGGCCAGGGCTGCGAAGGCATCACCCCCCTCCACGATGCCCTCAA
CTGTGGCCACTTCGAGGTGGCTGAGCTGCTGCTTGAACGGGGGGCGTCCGTCACCCTCCGCACTCGAAAG
GGCCTCAGCCCGCTGGAGACGCTGCAGCAGTGGGTGAAGCTGTACCGCAGGGACCTGGACCTGGAGACGC
GGCAGAAGGCCAGGGCCATGGAGATGCTGCTCCAGGCGGCTGCCTCGGGCCAAGATCCCCACAGCTCCCA
GGCCTTCCACACCCCAAGCAGCCTTCTGTTTGACCCCGAGACCTCTCCTCCTTTGAGCCCCTGCCCAGAA
CCCCCCTCTAATAGCACTAGACTCCCAGAGGCCTCTCAGGCCCATGTCAGGGTCTCCCCAGGGCAGGCGG
CACCAGCCATGGCCAGGCCTCGGAGGAGCAGGCATGGGCCAGCCAGCAGCAGCAGCAGCTCAGAAGGCGA
GGACAGCGCAGGCCCCGCACGGCCGTCCCAGAAGAGGCCTCGGTGCTCGGCCACAGCACAACGGGTGGCA
GCCTGGACGCCTGGCCCCGCCAGCAACAGGGAAGCAGCCACAGCCAGCACCAGCCGGGCAGCCTACCAGG
CAGCCATCCGGGGTGTGGGCAGTGCTCAGAGCCGGCTGGGGCCTGGCCCACCGCGGGGCCACAGCAAAGC
CCTTGCCCCCCAGGCAGCGCTCATCCCGGAGGAGGAGTGCCTGGCCGGGGACTGGCTGGAGCTGGACATG
CCCCTGACCCGCAGCCGCCGGCCCCGCCCCCGGGGCACTGGAGACAACCGCAGGCCCAGTAGTACCTCTG
GGTCGGACAGTGAGGAGAGCAGGCCCCGTGCCCGAGCCAAGCAGGTCCGCCTGACCTGCATGCAGAGTTG
CAGTGCGCCAGTTAACGCAGGGCCCAGCAGCCTGGCTTCAGAACCTCCAGGGAGCCCCAGCACCCCCAGG
GTCTCAGAGCCCAGTGGGGACAGCTCTGCGGCAGGCCAGCCCTTGGGTCCGGCCCCGCCCCCTCCCATCC
GGGTTCGAGTTCAAGTTCAGGATCATCTCTTCCTCATCCCTGTCCCACACAGCAGTGACACCCACTCTGT
GGCCTGGCTGGCCGAGCAGGCGGCCCAGCGCTACTACCAGACCTGCGGGCTGCTGCCCAGGCTCACCCTA
CGGAAAGAGGGGGCCCTGCTGGCCCCACAGGACCTCATCCCTGATGTGCTGCAGAGCAATGACGAGGTGT
TGGCTGAGGTGACTTCGTGGGACCTGCCCCCGTTGACTGACCGCTACCGCAGGGCCTGCCAGAGCCTGGG
GCAAGGGGAGCACCAACAGGTGCTGCAGGCCGTGGAGCTCCAGGGCTTGGGCCTCTCGTTCAGCGCCTGC
TCCCTGGCCCTGGACCAGGCCCAGCTTACACCCCTGCTGCGGGCCCTCAAGCTGCACACAGCACTCCGGG
AGCTGCGCCTGGCAGGGAACCGGCTGGGGGACAAGTGTGTGGCTGAGCTGGTGGCTGCCCTGGGCACCAT
GCCCAGCCTGGCCCTCCTTGACCTCTCCTCCAATCACCTGGGTCCCGAAGGCCTGCGCCAGCTTGCCATG
GGGCTCCCAGGCCAAGCCACCTTGCAGAGTTTGGAGGAGCTGGACTTAAGCATGAACCCCCTGGGGGACG
GCTGTGGCCAGTCCCTGGCCTCCCTCCTGCACGCCTGCCCCTTACTCAGCACCCTGCGCCTGCAGGCGTG
TGGCTTCGGCCCCAGCTTCTTTCTGAGCCACCAGACAGCACTGGGTAGTGCTTTCCAAGATGCTGAGCAC
CTGAAGACCCTGTCCCTGTCCTACAACGCCCTGGGAGCCCCTGCCCTGGCCAGGACCCTGCAGAGCCTGC
CCGCCGGCACCCTCCTGCACTTAGAGCTCAGCTCCGTGGCAGCCGGCAAGGGTGATTCGGACCTCATGGA
GCCTGTATTCCGATACCTGGCCAAGGAAGGCTGTGCTCTAGCCCACCTGACCCTGTCTGCAAACCACCTG
GGGGACAAGGCTGTTAGAGACCTGTGCAGATGTCTCTCTCTGTGCCCCTCACTCATCTCACTGGATCTGT
CTGCCAACCCTGAGATCAGCTGTGCCAGCTTGGAAGAGCTCCTGTCCACCCTCCAAAAGCGGCCCCAAGG
CCTTAGCTTCCTTGGCCTGTCAGGCTGCGCCGTCCAGGGTCCCCTGGGCCTGGGCCTGTGGGACAAGATA
GCCGCGCAGCTCCGGGAACTGCAGCTGTGCAGCAGACGCCTCTGCGCTGAGGACAGGGACGCCCTGCGCC
AGCTGCAGCCCAGTCGGCCGGGCCCCGGCGAGTGCACGCTGGACCACGGCTCCAAGCTCTTCTTTCGGCG
CCTCTGA

Translation (1378 aa):
MSLERELRQLSKAKAKAQRAGQRREEAALCHQLGELLAGHGRYAEALEQHWQELQLRERADDPLGCAVAH
RKIGERLAEMEDYPAALQHQHQYLELAHSLRNHTELQRAWATIGRTHLDIYDHCQSRDALLQAQAAFEKS
LAIVDEELEGTLAQGELNEMRTRLYLNLGLTFESLQQTALCNDYFRKSIFLAEQNHLYEDLFRARYNLGT
IHWRAGQHSQAMRCLEGARECAHTMRKRFMESECCVVIAQVLQDLGDFLAAKRALKKAYRLGSQKPVQRA
AICQNLQHVLAVVRLQQQLEEAEGRDPQGAMVICEQLGDLFSKAGDFPRAAEAYQKQLRFAELLDRPGAE
RAIIHVSLATTLGDMKDHHGAVRHYEEELRLRSGNVLEEAKTWLNIALSREEAGDAYELLAPCFQKALSC
AQQAQRPQLQRQVLQHLHTVQLRLQPQEAPETETRLRELSVAEDEDEEEEAEEAAATAESEALEAGEVEL
SEGEDDTDGLTPQLEEDEELQGHLGRRKGSKWNRRNDMGETLLHRACIEGQLRRVQDLVRQGHPLNPRDY
CGWTPLHEACNYGHLEIVRFLLDHGAAVDDPGGQGCEGITPLHDALNCGHFEVAELLLERGASVTLRTRK
GLSPLETLQQWVKLYRRDLDLETRQKARAMEMLLQAAASGQDPHSSQAFHTPSSLLFDPETSPPLSPCPE
PPSNSTRLPEASQAHVRVSPGQAAPAMARPRRSRHGPASSSSSSEGEDSAGPARPSQKRPRCSATAQRVA
AWTPGPASNREAATASTSRAAYQAAIRGVGSAQSRLGPGPPRGHSKALAPQAALIPEEECLAGDWLELDM
PLTRSRRPRPRGTGDNRRPSSTSGSDSEESRPRARAKQVRLTCMQSCSAPVNAGPSSLASEPPGSPSTPR
VSEPSGDSSAAGQPLGPAPPPPIRVRVQVQDHLFLIPVPHSSDTHSVAWLAEQAAQRYYQTCGLLPRLTL
RKEGALLAPQDLIPDVLQSNDEVLAEVTSWDLPPLTDRYRRACQSLGQGEHQQVLQAVELQGLGLSFSAC
SLALDQAQLTPLLRALKLHTALRELRLAGNRLGDKCVAELVAALGTMPSLALLDLSSNHLGPEGLRQLAM
GLPGQATLQSLEELDLSMNPLGDGCGQSLASLLHACPLLSTLRLQACGFGPSFFLSHQTALGSAFQDAEH
LKTLSLSYNALGAPALARTLQSLPAGTLLHLELSSVAAGKGDSDLMEPVFRYLAKEGCALAHLTLSANHL
GDKAVRDLCRCLSLCPSLISLDLSANPEISCASLEELLSTLQKRPQGLSFLGLSGCAVQGPLGLGLWDKI
AAQLRELQLCSRRLCAEDRDALRQLQPSRPGPGECTLDHGSKLFFRRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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