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Report for CCDS41630.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41630.1 Public Homo sapiens 11 CCDC73 24 110 108 CCDS HistoryNCBI Gene:493860Re-query CCDS DB by CCDS ID:41630.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41630.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335185.10 ENSP00000335325.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335185.10Link to Ensembl Protein Viewer:ENSP00000335325.5Re-query CCDS DB by Nucleotide ID:ENST00000335185Re-query CCDS DB by Protein ID:ENSP00000335325
Original member Current member NCBI NM_001008391.4 NP_001008392.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008391.4Link to Protein Sequence:NP_001008392.2Re-query CCDS DB by Nucleotide ID:NM_001008391Re-query CCDS DB by Protein ID:NP_001008392Link to BLAST:NP_001008392.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008392.2 1079 Q6ZRK6-1 1079 100% 0 0

Chromosomal Locations for CCDS 41630.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 32602811 32603020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32611132 32611265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32613422 32614942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32615940 32616129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32635696 32635830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32641972 32642082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32653123 32653227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32653978 32654037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32654844 32654972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32675565 32675644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32675886 32676021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32683536 32683574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32699251 32699325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32700791 32700826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32702873 32702944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32718076 32718147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32760109 32760243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3240 nt):
ATGGAAAGCAACTTCAATACTGAGTCATCATCTACTTTTACTCTTCAAAGTTCTTCAGAGACATTGTTTT
CT
ATTCAGCTATTAGATTTCAAAACAAGTTTACTGGAGGCATTAGAAGAATTGCGTATGAGAAGGGAAGC
A
GAAATTCATTATGAAGAGCAGATTGGTAAAATTATTGTGGAGACACAGGAACTTAAATGGCAAAAGGAA
ACT
CTTCAGAATCAAAAGGAAACATTGGCAGAGCAACACAAGGAAGCAATGGCAGTTTTTAAAAAGCAGT
TG
CAGATGAAGATGTGTGCCCTGGAAGAAGAAAAGGGAAAATATCAACTTGCTACAGAAATAAAGGAAAA
A
GAAATAGAAGGATTGAAGGAAACATTAAAAGCACTACAGGTTTCTAAATACTCTTTACAGAAGAAAGTG
AGT
GAAATGGAACAAAAGGTCCAGTTACATCTTCTGGCTAAAGAAGACTATCATAAGCAACTGAGTGAAA
TT
GAGAAATATTATGCCACAATAACAGGTCAATTTGGATTGGTAAAAGAGAATCATGAAAAGTTAGAACA
A
AATGTACGGGAAGCAATACAATCAAACAAAAGACTTTCAGCTTTAAATAAAAAACAAGAAGCTGAAATA
TGC
AGTTTAAAGAAGGAACTAAAAAAAGCAGCCTCAGACTTGATAAAGTCCAAAGTCACATGTCAATATA
AG
ATGGGAGAAGAAAACATCAATCTAACAATTAAAGAACAAAAATTTCAAGAACTTCAAGAAAGACTCAA
C
ATGGAATTGGAATTAAATGAGAAGATTAATGAAGAGATTACCCATATTCAAGAAGAAAAACAGGATATC
ATC
ATTTCTTTCCAACATATGCAGCAGTTACTTCGGCAACAAATTCAAGCTAATACTGAAATGGAGGCAG
AA
TTGAAGGTGCTAAAAGAAAATAATCAGACCCTTGAAAGAGATAATGAGCTGCAAAGGGAGAAGGTAAA
A
GAAAATGAAGAAAAGTTTCTTAATCTTCAAAATGAGCATGAAAAAGCACTAGGAACTTGGAAAAGACAT
GCT
GAAGAACTTAATGGAGAAATTAATAAGATTAAAAATGAATTATCATCCCTTAAAGAAACTCATATTA
AG
TTACAAGAACATTATAACAAATTATGCAATCAAAAAACATTTGAGGAAGACAAAAAGTTTCAGAATGT
T
CCAGAAGTAAATAATGAAAACAGTGAAATGTCAACTGAAAAATCAGAAAACACCATTATACAGAAATAT
AAT
ACTGAGCAAGAAATAAGGGAAGAAAATATGGAGAATTTTTGTTCAGATACTGAATACAGAGAAAAAG
AA
GAAAAAAAAGAAGGCTCATTTATAGAGGAAATAATTATAGATGATTTACAGCTTTTTGAAAAAAGCTT
C
AAGAATGAAATTGATACTGTTGTTTCTCAGGATGAAAATCAAAGTGAAATCTCCTTAAGCAAAACCCTC
TCC
TTAGATAAAGAAGTAATTAGTCAAGGACAAACCTCGAATGTTACGGACAACAGAAAATCAGTTACTA
CA
GAAATAAAAGACAAGATATGCTTGGAAAAAGACAATGGATGTACAGAATTTAAATCACCAAATAATCA
T
TTTGTAGTGTTAGATACAGCAATAGAAACAGAAAAAATACATCTAGAAAGAACCAGAGGATTAGATGTT
CAC
CATACAGATGTAAATCTGGAGGTTGAAAATAACAAAACATCATTTAACAGTATTTTAAATGAGACAG
CA
CACAATACATATCACAATAATAATAAAGATGTTTCTGAAAATGAGCCATTCAAACAATTCAGATTGCT
T
CCAGGGACTCGAGAACATGCTCTAGAGAAGGAAATTACAAATAGTGACCAAACCAAAGCAGATTTGGAC
TCG
TCTCTAGATATAAAAAAAAATCCTGTTCCATGTCAGAAATATAGTTTACGGAATTCAAGTAATGTTA
TG
TTAGATGATAAACAATGTAAAATAAAACAAATACAACTGTTAACTAAAAAAAGTGAGTGCAGCATATT
A
CTTTCTAAACAAACTTCAGATTTTCTGCAAGTCTGTAATGATACTTTAGAGAAATCTGAACTAACTGTT
CCC
TGTGATATAGTAATCGACCACCATGTTTCATATGCTGCTTTTAGTGCTAATTCAAAACTACTTCTGA
AG
AACTCAGATAAAAATGTCCATAGTATGTCTATGTTGGTGAAACCTAACTCAAGCCCTGGGGGAAAAAC
T
ATGTGTAAAAATATGAGTGATATGCAAAACAGTCAATTTAATAACTGTTTGGGATACTTAGAAAACACT
AAT
GTGAACATTTCCCATCTTCATCTTAACAATGAGAATAGTCATGCTTCACAAGCCAAAGATGTGAAAA
CT
GCTGTTCACATGAAAACTTGCACAGAAACAGAGTTTTCCAATAAAAAGAATCAGATTGATGAGAATCA
G
GTAACTGAAGCCACAAAAAATGACCTCTTCCTTTTTGTGAGCATTAATGAAAGACAGCATACATTGTTA
AAT
AATACAGAGAAAACAGAATCATTAAATGACATTGTTTCAGGAAAAATGTTCAGTGAAGGACAGCTGG
AG
GAATCACATTCATTTCACATAGAGCCATCTGGAGATTTAGTAAACAGAAGCGGAAGGTCAACCTTTGA
T
CTTTCAACTTCAGATAAAAAAACTGAGAAAACTCCAGTATACATGAATTTTTCAGACCCCGGTCCTTGG
TCA
AAAGTAAATCACATTGAAAGTCAAACAGCGAGCAGTTCGACCCCTTGCATTTCTTTGTTGCTGAAGG
AG
AGACCACTAGATCCATCAGAAAACAAAAAGATCATTTCAATGGCTCTTTGTAAAAATATTGGTGTGGA
T
GATGTTGGAAAGGATATTGGACCAGATACTACCAGCATTAACAGAGTTGCTGACACTTTGAATAACTGG
AGT
ATCCATCCAGATCCCAAGGGAGAACCCAGTGAAGAGAAGAATGCAATGGCAAAGACTTTTTATGATT
CC
TCTTTTCCCACAGAACATGTGAAAACAAAGCCTCTGATATCAACTCCACTACAAAGCCATTTGCAGGC
A
ATCAAGACGACTAAAAATACTTCTGGTGATGATGACTGGCAGAGCCTCATTACGAATCAACTAAATAAA
AGT
GAAAATTTACTAAGTTTAGAAAATGACAACCAGCCAAAGAAAAGAAAAGCAGAAGAGACGTTGGAAA
AA
AACAACAGATTAAAATAA


Translation (1079 aa):
MESNFNTESSSTFTLQSSSETLFSIQLLDFKTSLLEALEELRMRREAEIHYEEQIGKIIVETQELKWQKE
T
LQNQKETLAEQHKEAMAVFKKQ
LQMKMCALEEEKGKYQLATEIKEKEIEGLKETLKALQVSKYSLQKKV
S
EM
EQKVQLHLLAKEDYHKQLSEIEKYYATITGQFGLVKENHEKLEQNVREAIQSNKRLSALNKKQEAEI
C
SLKK
ELKKAASDLIKSKVTCQYKMGEENINLTIKEQKFQELQERLNMELELNEKINEEITHIQEEKQDI
I
ISFQHMQQLLRQQIQANTEMEAELKVLKENNQ
TLERDNELQREKVKENEEKFLNLQNEHEKALGTWKRH
A
EELNGEINKIKNELSSLKETHIKLQEHYNKLCNQKTFEEDKKFQ
NVPEVNNENSEMSTEKSENTIIQKY
N
TEQEIREENMENFCSDTEYREKEEKKEGSFIEEIIID
DLQLFEKSFKNEIDTVVSQDENQSEISLSKTL
S
LDKEVISQGQTSNVTDNRKSVTTEIKDKICLEKDNGCTEFKSPNNHFVVLDTAIETEKIHLERTRGLDV
H
HTDVNLEVENNKTSFNSILNETAHNTYHNNNKDVSENEPFKQFRLLPGTREHALEKEITNSDQTKADLD
S
SLDIKKNPVPCQKYSLRNSSNVMLDDKQCKIKQIQLLTKKSECSILLSKQTSDFLQVCNDTLEKSELTV
P
CDIVIDHHVSYAAFSANSKLLLKNSDKNVHSMSMLVKPNSSPGGKTMCKNMSDMQNSQFNNCLGYLENT
N
VNISHLHLNNENSHASQAKDVKTAVHMKTCTETEFSNKKNQIDENQVTEATKNDLFLFVSINERQHTLL
N
NTEKTESLNDIVSGKMFSEGQLEESHSFHIEPSGDLVNRSGRSTFDLSTSDKKTEKTPVYMNFSDPGPW
S
KVNHIESQTASSSTPCISLLLKERPLDPSENKKIISMALCKNIGVDDVGKDIGP
DTTSINRVADTLNNW
S
IHPDPKGEPSEEKNAMAKTFYDSSFPTEH
VKTKPLISTPLQSHLQAIKTTKNTSGDDDWQSLITNQLNK
S
ENLLSLENDNQPKKRKAEETLEKNNRLK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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