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Report for CCDS24042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24042.1 Public Mus musculus 10 Thop1 23 108 98 CCDS HistoryNCBI Gene:50492Re-query CCDS DB by CCDS ID:24042.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24042.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005057.6 ENSMUSP00000005057.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005057.6Link to Ensembl Protein Viewer:ENSMUSP00000005057.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005057Re-query CCDS DB by Protein ID:ENSMUSP00000005057
Original member Current member NCBI NM_022653.4 NP_073144.3 Accepted alive Link to Nucleotide Sequence:NM_022653.4Link to Protein Sequence:NP_073144.3Re-query CCDS DB by Nucleotide ID:NM_022653Re-query CCDS DB by Protein ID:NP_073144Link to BLAST:NP_073144.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073144.3 687 Q8C1A5 687 99.8544% 0 1

Chromosomal Locations for CCDS 24042.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81070263 81070278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81073153 81073365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81075511 81075659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81076943 81077050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81077913 81078015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81078470 81078630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81079458 81079593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81079871 81080237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81080413 81080614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81081027 81081213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81081307 81081435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81081600 81081736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81081864 81082019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2064 nt):
ATGAAGCCCCCCGCAGCCTGTGCTGGGGACGTGGTGGATGCAGCATCCCCAGCCTCCACCGTGAATCATC
TTCGCTGGGATCTGAGCGCACAGCAGATCAGGGCTCTAACCACGCAGCTCATCGAGCAGACCAAGTGTGT
GTACGACCGAGTGGGTGCTCAGAACTTCGAGGATGTGTCGTATGAGAGCACACTGAAGGCACTGGCTGAC
GTGGAGGTCACCTACACAGTGCAGAGGAACATTCTCGACTTCCCCCAACACGTGTCCCCGTGCAAGGACA
TCCGTGCAGCCAGCACAGAGGCTGACAAGAAGCTCTCGGAGTTTGATGTAGAGATGAGCATGAGACAGGA
CGTGTACCAGAGGGTCGTGTGGCTGCAGGAGAAAACCCCGAAAGATTCCCTGAAGCCTGAAGCAGCTCGC
TACCTGGAGCGGCTCATCAAGCTGGGCCGGAGAAACGGCCTCCACTTACCTCAGGACACACAAGAGAAGA
TCAAGAACATCAAGAAGAGGCTGAGCCTGCTGTGCATCGACTTCAACAAGAACCTCAACGAGGACACCAC
CTTCCTGCCCTTCACAAGAGAGGAGCTGGGTGGGCTCCCGGAGGACTTTCTGAGCTCTCTGGAGAAGGCA
GAGGACGGCAAGCTGAAGGTCACCCTCAAGTACCCTCACTACTTCCCGCTGTTGAAGAAGTGCCATGTGC
CGGAGACACGACGCCTGTTGGAGGAGGCCTTCAACTGTCGCTGCAAGGAGGAGAACTGTGCCATTCTGAA
GGAGCTAGTGTCCCTGCGAGCACAGAAGTCCAGCCTGTTGGGGTTCCACACACACGCGGACTACGTCCTG
GAGATGAACATGGCCAAGACCAGTCAAACAGTAGCCACCTTCCTAGATGAGCTGGCACAGAAGCTGAAGC
CCCTGGGTGAGCAGGAGCGCGCGGTCATCCTGGAGCTGAAGGAGGCAGAGTGCGCCAAGCGGGGACTGCC
ATTCGACGGGCGCATCCACGCATGGGACATGCGCTACTACATGAACCAGGTGGAGGAGACTCGCTATCGT
GTGGACCAGAACCTGCTGAAGGAGTACTTCCCCATGCAGGTGGTCACACGTGGGCTGCTGGCCATCTACC
AAGAGCTGCTGGGGCTGACCTTCACGCTGGAGGAAGGTGCCGCTGCCTGGCACGAGGACGTGCGGCTCTA
CTCAGTGCGGGACGCCGCCTCTGGAGAGGAGATCGGCAAGTTCTACCTCGACCTATACCCCAGGGAAGGG
AAATATGGCCATGCAGCCTGCTTTGGCCTGCAGCCTGGCTGCCTACGGCAGGATGGCAGCCGGCAGCTGG
CCGTCGCAGCCATGGTGGCCAATTTCACGAAGCCCACACCTGACGCGCCATCCCTGCTGCAGCATGATGA
GGTGGAGACCTACTTCCACGAGTTCGGGCACGTCATGCACCAGCTGTGCTCGCAGGCGGAGTTTGCCATG
TTCAGTGGGACCCACGTGGAGCGGGACTTTGTGGAGGCGCCGTCCCAGATGCTGGAGAACTGGGTGTGGG
AGAAGGAGCCCCTGATGCGCATGTCTCAGCACTACCGCACGGGCAGCGAGGCCCCTCAGGACCTCCTGGA
GAAGCTCATCAAGTCTCGCCAGGCCAATGCAGGTCTCTTCAACCTGCGGCAGATTGTGCTTGCCAAGGTG
GATCAGGTCCTGCACACACAGACAGACGCAGACCCGGCTGAGGAATATGCCCGGCTCTGCCAAGAGATCC
TCGGGGTGCCAGCCACACCAGGTACCAACATGCCAGCCACTTTCGGCCACCTAGCTGGCGGCTATGATGC
TCAGTACTATGGCTACTTATGGAGCGAAGTGTACTCGATGGACATGTTCCACACACGCTTCAAGCAAGAG
GGTGTGCTTAGCCCCAAGGTTGGCATGGACTACAGGACCAGCATCCTGAGGCCAGGGGGCTCTGAGGACG
CCAGCGCCATGCTGAAGCAGTTCCTGGGCCGCGACCCCAAGCAGGACGCCTTCCTCCTGAGCAAGGGTCT
GCAGGTGGAGGGCAGCGAGGCGCCTGCGTGCTGA

Translation (687 aa):
MKPPAACAGDVVDAASPASTVNHLRWDLSAQQIRALTTQLIEQTKCVYDRVGAQNFEDVSYESTLKALAD
VEVTYTVQRNILDFPQHVSPCKDIRAASTEADKKLSEFDVEMSMRQDVYQRVVWLQEKTPKDSLKPEAAR
YLERLIKLGRRNGLHLPQDTQEKIKNIKKRLSLLCIDFNKNLNEDTTFLPFTREELGGLPEDFLSSLEKA
EDGKLKVTLKYPHYFPLLKKCHVPETRRLLEEAFNCRCKEENCAILKELVSLRAQKSSLLGFHTHADYVL
EMNMAKTSQTVATFLDELAQKLKPLGEQERAVILELKEAECAKRGLPFDGRIHAWDMRYYMNQVEETRYR
VDQNLLKEYFPMQVVTRGLLAIYQELLGLTFTLEEGAAAWHEDVRLYSVRDAASGEEIGKFYLDLYPREG
KYGHAACFGLQPGCLRQDGSRQLAVAAMVANFTKPTPDAPSLLQHDEVETYFHEFGHVMHQLCSQAEFAM
FSGTHVERDFVEAPSQMLENWVWEKEPLMRMSQHYRTGSEAPQDLLEKLIKSRQANAGLFNLRQIVLAKV
DQVLHTQTDADPAEEYARLCQEILGVPATPGTNMPATFGHLAGGYDAQYYGYLWSEVYSMDMFHTRFKQE
GVLSPKVGMDYRTSILRPGGSEDASAMLKQFLGRDPKQDAFLLSKGLQVEGSEAPAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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