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Report for CCDS83335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83335.1 Public Homo sapiens 8 ZFTRAF1 24 110 108 CCDS HistoryNCBI Gene:50626Re-query CCDS DB by CCDS ID:83335.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83335.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000530374.6 ENSP00000433769.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000530374.6Link to Ensembl Protein Viewer:ENSP00000433769.1Re-query CCDS DB by Nucleotide ID:ENST00000530374Re-query CCDS DB by Protein ID:ENSP00000433769
Original member Current member NCBI NM_001330618.2 NP_001317547.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001330618.2Link to Protein Sequence:NP_001317547.1Re-query CCDS DB by Nucleotide ID:NM_001330618Re-query CCDS DB by Protein ID:NP_001317547Link to BLAST:NP_001317547.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317547.1 404 P0DTL6-5 404 100% 0 0

Chromosomal Locations for CCDS 83335.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144450379 144450770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144452359 144452570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144453222 144453460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144462283 144462654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGTCCGGCGCCGAGGAGGCCGGCGGGGGCGGCCCGGCCGCGGGGCCCGCGGGCTCCGTGCCGGCCGGGG
TCGGGGTCGGGGTCGGAGCCGGGCCCGGGGCGGCCGCCGGGCAGGCGGCGGCGGCGGCTCTGGGCGAGGC
GGCGGGGCCTGGGCTCCCGGACGAGGCGGGCTTGGCGGGCGCCCGGCAGCTACAGCTGCAGGAGGCGGCC
GGCGACCCCGACGCGCCGCCCAAGAAGCGGCTGCGGGCAGCCGAGGCGGCCGAGGCGGCGGCGGCGGCGG
CGGCGGCCGGCAGCGGGAAACTGGAGGAGCGGCTCTACTCGGTGCTGTGCTGCACCGTGTGCCTGGACCT
GCCCAAGGCCTCCGTGTACCAGTGTACTAATGGTCACTTGATGTGCGCTGGCTGTTTTATCCACCTACTA
GCAGATGCCCGGCTGAAGGAGGAGCAGGCCACGTGCCCCAATTGTCGTTGTGAGATCAGTAAGAGCCTCT
GCTGCCGGAACCTGGCCGTGGAGAAAGCCGTGAGCGAGCTGCCTTCAGAGTGTGGCTTCTGCCTGCGCCA
GTTTCCCCGCTCCCTCCTGGAGAGGCACCAGAAAGAGGAATGCCAGGACAGGGTAACCCAGTGCAAGTAC
AAACGCATCGGCTGCCCATGGCACGGCCCCTTCCATGAGCTGACGGTGCACGAGGCTGCGTGCGCCCACC
CGACCAAGACAGGCAGTGAGCTGATGGAGATCCTGGATGGGATGGACCAGAGCCACCGCAAGGAGATGCA
GCTGTACAACAGCATCTTCAGCCTGCTCAGCTTCGAGAAGATTGGCTACACAGAGGTCCAGTTCCGGCCG
TACCGCACAGACGACTTCATCACGCGCCTGTACTATGAGACGCCCAGGTTCACAGTGCTGAACCAGACGT
GGGTCCTGAAGGCTCGAGTCAACGACTCGGAGCGTAACCCCAACCTGTCCTGCAAGCGTACGCTCTCCTT
CCAGCTCCTCCTCAAGAGCAAGGTCACGGCACCGCTGGAGTGCTCCTTCCTGCTGCTCAAGGGCCCCTAC
GACGACGTGAGGATCAGCCCCGTCATCTACCACTTTGTCTTCACCAACGAGAGCAACGAGACGGACTACG
TGCCACTGCCCATCATTGACTCCGTGGAGTGCAACAAGCTGCTGGCTGCCAAGAACATCAACCTGCGGCT
CTTCCTGTTCCAGATACAGAAGTAG

Translation (404 aa):
MSGAEEAGGGGPAAGPAGSVPAGVGVGVGAGPGAAAGQAAAAALGEAAGPGLPDEAGLAGARQLQLQEAA
GDPDAPPKKRLRAAEAAEAAAAAAAAGSGKLEERLYSVLCCTVCLDLPKASVYQCTNGHLMCAGCFIHLL
ADARLKEEQATCPNCRCEISKSLCCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKY
KRIGCPWHGPFHELTVHEAACAHPTKTGSELMEILDGMDQSHRKEMQLYNSIFSLLSFEKIGYTEVQFRP
YRTDDFITRLYYETPRFTVLNQTWVLKARVNDSERNPNLSCKRTLSFQLLLKSKVTAPLECSFLLLKGPY
DDVRISPVIYHFVFTNESNETDYVPLPIIDSVECNKLLAAKNINLRLFLFQIQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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