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Report for CCDS22465.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
22465.1 |
Public |
Mus musculus |
8 |
Il27ra |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:50931](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:22465.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 8 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 22465.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000005601.8 |
ENSMUSP00000005601.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000005601.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000005601.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000005601](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000005601](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_016671.3 |
NP_057880.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_016671.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_057880.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_016671](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_057880](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_016671.4 |
NP_057880.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_016671.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_057880.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_016671](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_057880](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_057880.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_057880.2 |
623 |
O70394 |
623 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 22465.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1872 nt): ATGAACCGGCTCCGGGTTGCACGCCTCACGCCGTTGGAGCTTCTGCTGTCGCTGATGTCGCTGCTGCTCG GGACGCGGCCCCACGGCAGTCCAGGTCCACTGCAGTGCTACAGCGTCGGTCCCCTGGGAATCCTGAACTG CTCCTGGGAACCTTTGGGCGACCTGGAGACTCCACCTGTGCTGTATCACCAGAGTCAGAAATACCATCCC AATAGAGTCTGGGAGGTGAAGGTGCCTTCCAAACAGAGTTGGGTGACCATTCCCCGGGAACAGTTCACCA TGGCTGACAAACTCCTCATCTGGGGGACACAAAAGGGACGGCCTCTGTGGTCCTCTGTCTCTGTGAACCT GGAGACCCAAATGAAGCCAGACACACCCCAGATCTTCTCTCAAGTGGATATTTCTGAGGAAGCAACCCTG GAGGCCACTGTGCAGTGGGCGCCGCCCGTGTGGCCACCGCAGAAAGTTCTCATCTGTCAGTTCCGGTACA AGGAATGCCAGGCTGAAACATGGACCCGGCTGGAGCCCCAGCTGAAGACAGATGGGCTGACTCCTGTTGA GATGCAGAACCTGGAACCTGGCACCTGCTACCAGGTGTCTGGCCGCTGCCAGGTGGAGAACGGATATCCA TGGGGCGAGTGGAGTTCGCCCCTGTCCTTCCAGACGCCATTCTTAGATCCTGAAGATGTGTGGGTATCGG GGACCGTCTGTGAAACTTCTGGCAAACGGGCAGCCCTGCTTGTCTGGAAGGACCCAAGACCTTGTGTGCA GGTGACTTACACAGTCTGGTTTGGGGCTGGAGATATTACTACAACTCAAGAAGAGGTCCCGTGCTGCAAG TCCCCTGTCCCTGCATGGATGGAGTGGGCTGTGGTCTCTCCTGGCAACAGCACCAGCTGGGTGCCTCCCA CCAACCTGTCTCTGGTGTGCTTGGCTCCAGAATCTGCCCCCTGTGACGTGGGAGTGAGCAGTGCTGATGG GAGCCCAGGGATAAAGGTGACCTGGAAACAAGGGACCAGGAAACCGTTGGAGTATGTGGTGGACTGGGCT CAAGATGGTGACAGCCTGGACAAGCTCAACTGGACCCGTCTCCCCCCTGGAAACCTCAGCACATTGTTAC CAGGGGAGTTCAAAGGAGGGGTCCCCTATCGAATTACAGTGACTGCAGTATATTCTGGAGGATTAGCTGC TGCACCCTCAGTTTGGGGATTCAGAGAGGAGTTAGTACCCCTTGCTGGGCCAGCAGTTTGGCGACTTCCA GATGACCCCCCAGGGACACCTGTTGTAGCCTGGGGAGAAGTACCAAGACACCAGCTCAGAGGCCAGGCTA CTCACTACACCTTCTGCATACAGAGCAGAGGCCTCTCCACTGTCTGCAGGAACGTGAGCAGTCAAACCCA GACTGCCACTCTGCCCAACCTTCACTTGGGTTCCTTCAAGCTGTGGGTGACGGTGTCCACCGTTGCAGGA CAGGGCCCACCTGGTCCCAACCTTTCACTTCACCTACCAGATAATAGGATCAGGTGGAAAGCTCTGCCCT GGTTTCTGTCCCTGTGGGGTTTGCTTCTGATGGGCTGTGGCCTGAGCCTGGCCAGTACCAGGTGCCTACA GGCCAGGTGCTTACACTGGCGGCACAAGTTGCTTCCCCAGTGGATCTGGGAGAGGGTTCCTGATCCTGCC AACAGCAATTCTGGGCAACCTTACATCAAGGAGGTGAGCCTGCCCCAACCGCCCAAGGACGGACCCATCC TGGAGGTGGAGGAAGTGGAGCTACAGCCTGTTGTGGAGTCCCCTAAAGCCTCTGCCCCAATTTACTCTGG GTATGAGAAACACTTCCTGCCCACACCAGAGGAGCTGGGCCTTCTAGTCTGA
Translation (623 aa): MNRLRVARLTPLELLLSLMSLLLGTRPHGSPGPLQCYSVGPLGILNCSWEPLGDLETPPVLYHQSQKYHP NRVWEVKVPSKQSWVTIPREQFTMADKLLIWGTQKGRPLWSSVSVNLETQMKPDTPQIFSQVDISEEATL EATVQWAPPVWPPQKVLICQFRYKECQAETWTRLEPQLKTDGLTPVEMQNLEPGTCYQVSGRCQVENGYP WGEWSSPLSFQTPFLDPEDVWVSGTVCETSGKRAALLVWKDPRPCVQVTYTVWFGAGDITTTQEEVPCCK SPVPAWMEWAVVSPGNSTSWVPPTNLSLVCLAPESAPCDVGVSSADGSPGIKVTWKQGTRKPLEYVVDWA QDGDSLDKLNWTRLPPGNLSTLLPGEFKGGVPYRITVTAVYSGGLAAAPSVWGFREELVPLAGPAVWRLP DDPPGTPVVAWGEVPRHQLRGQATHYTFCIQSRGLSTVCRNVSSQTQTATLPNLHLGSFKLWVTVSTVAG QGPPGPNLSLHLPDNRIRWKALPWFLSLWGLLLMGCGLSLASTRCLQARCLHWRHKLLPQWIWERVPDPA NSNSGQPYIKEVSLPQPPKDGPILEVEEVELQPVVESPKASAPIYSGYEKHFLPTPEELGLLV
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