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Report for CCDS31391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31391.1 Public Homo sapiens 11 TRIM34 24 110 108 CCDS HistoryNCBI Gene:53840Re-query CCDS DB by CCDS ID:31391.1Re-query CCDS DB by GeneID:53840See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31391.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429814.3 ENSP00000402595.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000429814.3Link to Ensembl Protein Viewer:ENSP00000402595.2Re-query CCDS DB by Nucleotide ID:ENST00000429814Re-query CCDS DB by Protein ID:ENSP00000402595
Original member Current member EBI ENST00000514226.5 ENSP00000422947.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514226.5Link to Ensembl Protein Viewer:ENSP00000422947.1Re-query CCDS DB by Nucleotide ID:ENST00000514226Re-query CCDS DB by Protein ID:ENSP00000422947
Original member Current member NCBI NM_001003827.1 NP_001003827.1 Accepted alive Link to Nucleotide Sequence:NM_001003827.1Link to Protein Sequence:NP_001003827.1Re-query CCDS DB by Nucleotide ID:NM_001003827Re-query CCDS DB by Protein ID:NP_001003827Link to BLAST:NP_001003827.1
Original member Current member NCBI NM_021616.6 NP_067629.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021616.6Link to Protein Sequence:NP_067629.2Re-query CCDS DB by Nucleotide ID:NM_021616Re-query CCDS DB by Protein ID:NP_067629Link to BLAST:NP_067629.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003827.1 488 Q9BYJ4-1 488 100% 0 0
NP_067629.2 488 Q9BYJ4-1 488 100% 0 0

Chromosomal Locations for CCDS 31391.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5632332 5632754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5633804 5633899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5634631 5634861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5641167 5641189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5642406 5642506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5642817 5642843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5643144 5643709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGGCTTCAAAAATCTTGCTTAACGTACAAGAGGAGGTGACCTGTCCCATCTGCCTGGAGCTGTTGACAG
AACCCTTGAGTCTAGACTGTGGCCACAGCCTCTGCCGAGCCTGCATCACTGTGAGCAACAAGGAGGCAGT
GACCAGCATGGGAGGAAAAAGCAGCTGTCCTGTGTGTGGTATCAGTTACTCATTTGAACATCTACAGGCT
AATCAGCATCTGGCCAACATAGTGGAGAGACTCAAGGAGGTCAAGTTGAGCCCAGACAATGGGAAGAAGA
GAGATCTCTGTGATCATCATGGAGAGAAACTCCTACTCTTCTGTAAGGAGGATAGGAAAGTCATTTGCTG
GCTTTGTGAGCGGTCTCAGGAGCACCGTGGTCACCACACAGTCCTCACGGAGGAAGTATTCAAGGAATGT
CAGGAGAAACTCCAGGCAGTCCTCAAGAGGCTGAAGAAGGAAGAGGAGGAAGCTGAGAAGCTGGAAGCTG
ACATCAGAGAAGAGAAAACTTCCTGGAAGTATCAGGTACAAACTGAGAGACAAAGGATACAAACAGAATT
TGATCAGCTTAGAAGCATCCTAAATAATGAGGAGCAGAGAGAGCTGCAAAGATTGGAAGAAGAAGAAAAG
AAGACGCTGGATAAGTTTGCAGAGGCTGAGGATGAGCTAGTTCAGCAGAAGCAGTTGGTGAGAGAGCTCA
TCTCAGATGTGGAGTGTCGGAGTCAGTGGTCAACAATGGAGCTGCTGCAGGACATGAGTGGAATCATGAA
ATGGAGTGAGATCTGGAGGCTGAAAAAGCCAAAAATGGTTTCCAAGAAACTGAAGACTGTATTCCATGCT
CCAGATCTGAGTAGGATGCTGCAAATGTTTAGAGAACTGACAGCTGTCCGGTGCTACTGGGTGGATGTCA
CACTGAATTCAGTCAACCTAAATTTGAATCTTGTCCTTTCAGAAGATCAGAGACAAGTGATATCTGTGCC
AATTTGGCCTTTTCAGTGTTATAATTATGGTGTCTTGGGATCCCAATATTTCTCCTCTGGGAAACATTAC
TGGGAAGTGGACGTGTCCAAGAAAACTGCCTGGATCCTGGGGGTATACTGTAGAACATATTCCCGCCATA
TGAAGTATGTTGTTAGAAGATGTGCAAATCGTCAAAATCTTTACACCAAATACAGACCTCTATTTGGCTA
CTGGGTTATAGGGTTACAGAATAAATGTAAGTATGGTGTCTTTGAAGAGTCTTTGTCCTCTGATCCCGAG
GTTTTGACTCTCTCCATGGCTGTGCCTCCCTGCCGTGTTGGGGTTTTCCTCGACTATGAAGCAGGCATTG
TCTCATTTTTCAATGTCACAAGCCATGGCTCCCTCATTTACAAGTTCTCTAAATGTTGCTTTTCTCAGCC
TGTTTATCCATATTTCAATCCTTGGAACTGTCCAGCTCCCATGACTCTATGCCCACCAAGCTCTTGA

Translation (488 aa):
MASKILLNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA
NQHLANIVERLKEVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCERSQEHRGHHTVLTEEVFKEC
QEKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTERQRIQTEFDQLRSILNNEEQRELQRLEEEEK
KTLDKFAEAEDELVQQKQLVRELISDVECRSQWSTMELLQDMSGIMKWSEIWRLKKPKMVSKKLKTVFHA
PDLSRMLQMFRELTAVRCYWVDVTLNSVNLNLNLVLSEDQRQVISVPIWPFQCYNYGVLGSQYFSSGKHY
WEVDVSKKTAWILGVYCRTYSRHMKYVVRRCANRQNLYTKYRPLFGYWVIGLQNKCKYGVFEESLSSDPE
VLTLSMAVPPCRVGVFLDYEAGIVSFFNVTSHGSLIYKFSKCCFSQPVYPYFNPWNCPAPMTLCPPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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