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Report for CCDS13445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13445.1 Public Homo sapiens 20 PFDN4 24 110 108 CCDS HistoryNCBI Gene:5203Re-query CCDS DB by CCDS ID:13445.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13445.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371419.7 ENSP00000360473.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371419.7Link to Ensembl Protein Viewer:ENSP00000360473.2Re-query CCDS DB by Nucleotide ID:ENST00000371419Re-query CCDS DB by Protein ID:ENSP00000360473
Original member Current member NCBI NM_002623.4 NP_002614.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002623.4Link to Protein Sequence:NP_002614.2Re-query CCDS DB by Nucleotide ID:NM_002623Re-query CCDS DB by Protein ID:NP_002614Link to BLAST:NP_002614.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002614.2 134 Q9NQP4 134 100% 0 0

Chromosomal Locations for CCDS 13445.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 54208101 54208124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 54214351 54214458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 54215300 54215440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 54219019 54219150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGGCGGCCACCATGAAGAAGGCGGCTGCAGAAGATGTCAATGTTACTTTCGAAGATCAACAAAAGATAA
ACAAATTTGCACGGAATACAAGTAGAATCACAGAGCTGAAGGAAGAAATAGAAGTAAAAAAGAAACAACT
CCAAAACCTAGAAGATGCTTGTGATGACATCATGCTTGCAGATGATGATTGCTTAATGATACCTTATCAA
ATTGGTGATGTCTTCATTAGCCATTCTCAAGAAGAAACGCAAGAAATGTTAGAAGAAGCAAAGAAAAATT
TGCAAGAAGAAATTGACGCCTTAGAATCCAGAGTGGAATCAATTCAGCGAGTGTTAGCAGATTTGAAAGT
TCAGTTGTATGCAAAATTCGGGAGCAACATAAACCTTGAAGCTGATGAAAGTTAA

Translation (134 aa):
MAATMKKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQ
IGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEADES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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