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Report for CCDS40171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40171.1 Public Mus musculus 7 Adgra1 23 108 98 CCDS HistoryNCBI Gene:52389Re-query CCDS DB by CCDS ID:40171.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40171.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026548.13 ENSMUSP00000026548.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026548.13Link to Ensembl Protein Viewer:ENSMUSP00000026548.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026548Re-query CCDS DB by Protein ID:ENSMUSP00000026548
Original member Current member NCBI NM_177469.3 NP_803420.2 Accepted alive Link to Nucleotide Sequence:NM_177469.3Link to Protein Sequence:NP_803420.2Re-query CCDS DB by Nucleotide ID:NM_177469Re-query CCDS DB by Protein ID:NP_803420Link to BLAST:NP_803420.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803420.2 578 Q8C4G9 578 100% 0 0

Chromosomal Locations for CCDS 40171.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 139840806 139840817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139845585 139845712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139847659 139847782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139852512 139852657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139873959 139874057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139874967 139876194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGACTCAGTGGGATTTGAAGACTGTCCTCTCCCTGCCCCAGTACCCAGGGGAGTTCCTGCATCCTGTGG
TGTATGCCTGCACCGCGGTCATGCTCCTGTGTCTCCTTGCCTCTGTCATCACCTACATCTTGCATCAGAG
TGCCATCCGGATAAGCCGGAAAGGCCGGCACGCACTCCTCAACTTCTGCTTCCACGCCGCTCTGACCTTC
ACCGTGTTTGCTGGTGGCATCAATCGCACCCAACACCCCATCCTGTGCCAAGCAGTGGGCATTGCTCTGC
ACTATTCCACGCTTTCTACCATGCTGTGGATCGGTGTGACTGCTAGGAACATCTACAAACAGGTGACCAA
GAAGGCCCTGCCATGTCCTGGAGCAGACCAGCCACCGTACCCTAAGCAGCCCTTGCTCAGGTTCTACCTC
ATCAGCGGAGGGGTCCCTTTCATCATCTGTGGGGTCACAGCTGCCACAAACATCAGAAATTATGGCACCG
AGGATGAGGACGTGGCATACTGCTGGATGGCCTGGGAACCCAGCCTGGGTGCGTTCTATGGGCCGGCTGC
CTTCATTGCCCTGGTCACCTGCGTGTACTTCCTCTGCACCTACGTGCAGCTGCGGCGTCACCCGGAGCGC
AGGTATGAGCTCAGAGAGCGCACGGAGGAGCAGCAGCGACTGGCTGTGCCAGAGAGCGGCCATCGCCACG
GAGTCCGTCCCGGGACCCCACCCACCTGTGATGCCCTGGCTGCCTCGCAGCTGCAGAACGAGCATTCCTT
CAAGGCTCAGCTTCGTGCCGCTGCCTTCACACTGTTCCTGTTCACAGCTACATGGACCTTTGGGGCCCTG
GCTGTGTCTCAGGGCCACTTCCTGGACATGATCTTCAGCTGTCTGTACGGCGCCTTCTGCGTGACACTGG
GACTCTTTGTACTTATCCATCACTGCGCCAAGCGGGAGGACGTGTGGCAGTGCTGGTGGTCCTGCTGCCC
TTCCCGGGGAGACACCTCCACCACCAAGCCCGGCGCCCATCCTACACTCGATGCCAACGGGGATGCGCTG
GGGCATACGGCCTGCCTGCAGGACTCACCATGCCCTGGGAAACTCAGAGGTTTTGGCCATCCACCAGCCA
GCCACTGCAAGATGACCAACCTGCAGGCTGCCCAGGGCCATGTCAGCTGTCTGTCACCTGCCACCCCGTG
CTGTGCCAAGATGCACTGTGAGCAGTTAATGGAGGAGGAGGCGGCCCACATCCACATGGCTGAGGAGGAC
GTCTACCCACACGATCCCCACCTGCATGACCCTCACCTGCACAGGTGCCTCAAGGGCAGAACTAAGTCCC
ACTACTTCAGCCGGCACCAGGCAGCTGCGGCTGAGAGGGAGTATGCTTACCACATCCCCTCCAGCCTGGA
TGGCAGTCCCCACAGTTCACGTTCGGAGAGCCCCACCAGCTCTCTGGAGGGCCCAATGGGGATGCACACA
TTGGCCTGCTGTGCCCAGGCTGACCCCTTCCCCATGGTCAGCCAGCCTGAGGGTGGAGACACAAGCCCTG
GGCTCTATGGCTGCCCCCCACACCTATCCCCAGGCCCTGCCCACTTGGAGATGCTACGAAGGACACAGTC
CCTGCCTTTTGGGGGCCCCAGCCAGAATGGGCTGCTCCAGGGTGATGTTCGAGAAGGCCTGCCATTTGGC
ACTGATGGGACAGGGAACATCCGAACAGGACCCTGGAAAAATGAAACTACAGTGTAG

Translation (578 aa):
MTQWDLKTVLSLPQYPGEFLHPVVYACTAVMLLCLLASVITYILHQSAIRISRKGRHALLNFCFHAALTF
TVFAGGINRTQHPILCQAVGIALHYSTLSTMLWIGVTARNIYKQVTKKALPCPGADQPPYPKQPLLRFYL
ISGGVPFIICGVTAATNIRNYGTEDEDVAYCWMAWEPSLGAFYGPAAFIALVTCVYFLCTYVQLRRHPER
RYELRERTEEQQRLAVPESGHRHGVRPGTPPTCDALAASQLQNEHSFKAQLRAAAFTLFLFTATWTFGAL
AVSQGHFLDMIFSCLYGAFCVTLGLFVLIHHCAKREDVWQCWWSCCPSRGDTSTTKPGAHPTLDANGDAL
GHTACLQDSPCPGKLRGFGHPPASHCKMTNLQAAQGHVSCLSPATPCCAKMHCEQLMEEEAAHIHMAEED
VYPHDPHLHDPHLHRCLKGRTKSHYFSRHQAAAAEREYAYHIPSSLDGSPHSSRSESPTSSLEGPMGMHT
LACCAQADPFPMVSQPEGGDTSPGLYGCPPHLSPGPAHLEMLRRTQSLPFGGPSQNGLLQGDVREGLPFG
TDGTGNIRTGPWKNETTV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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