NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26956.1 Public Mus musculus 14 Tspan14 23 108 98 CCDS HistoryNCBI Gene:52588Re-query CCDS DB by CCDS ID:26956.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26956.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047652.5 ENSMUSP00000035263.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047652.5Link to Ensembl Protein Viewer:ENSMUSP00000035263.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000047652Re-query CCDS DB by Protein ID:ENSMUSP00000035263
Original member Current member EBI ENSMUST00000224209.1 ENSMUSP00000153208.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224209.1Link to Ensembl Protein Viewer:ENSMUSP00000153208.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224209Re-query CCDS DB by Protein ID:ENSMUSP00000153208
Original member Current member NCBI NM_001316748.1 NP_001303677.1 Accepted alive Link to Nucleotide Sequence:NM_001316748.1Link to Protein Sequence:NP_001303677.1Re-query CCDS DB by Nucleotide ID:NM_001316748Re-query CCDS DB by Protein ID:NP_001303677Link to BLAST:NP_001303677.1
Original member NCBI NM_145928.2 NP_666040.1 Updated not alive Link to Nucleotide Sequence:NM_145928.2Link to Protein Sequence:NP_666040.1Re-query CCDS DB by Nucleotide ID:NM_145928Re-query CCDS DB by Protein ID:NP_666040
Current member NCBI NM_145928.3 NP_666040.1 Accepted alive Link to Nucleotide Sequence:NM_145928.3Link to Protein Sequence:NP_666040.1Re-query CCDS DB by Nucleotide ID:NM_145928Re-query CCDS DB by Protein ID:NP_666040Link to BLAST:NP_666040.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303677.1 270 Q8QZY6 270 100% 0 0
NP_666040.1 270 Q8QZY6 270 100% 0 0

Chromosomal Locations for CCDS 26956.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 40908058 40908129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40909585 40909704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40911113 40911157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40913362 40913487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40915380 40915550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40916803 40916949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40918630 40918680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40934188 40934268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGCACTATTATAGATACTCGAACGCCGAGGTCAGCTGCTGGTACAAGTACCTGCTCTTCAGCTACAATA
TCGTCTTTTGGCTGGCTGGAGTTGTCTTCCTTGGAGTCGGGCTGTGGGCATGGAGCGAAAAGGGTGTGCT
GTCCGACCTCACCAAGGTGACCCGGTTGCATGGAATCGACCCCGTCGTGCTGGTCTTGATGGTGGGCGTG
GTGATGTTCACACTGGGATTCGCAGGCTGTGTCGGGGCCCTCCGAGAGAACATCTGCCTGCTCAAGTTTT
TCTGTGGGGCCATTGTGCTCATCTTCTTCCTGGAACTGGCCGTGGCCGTGTTGGCCTTTTTATTCCAAGA
CTGGGTGAGAGACCGGTTCCGGGAATTCTTCGAGAGCAACATCAAGTCCTATCGGGATGACATCGACCTG
CAGAACCTCATTGACTCCCTTCAGAAAGCTAATCAGTGCTGCGGGGCTTACGGCCCTGAAGACTGGGACC
TCAATGTCTACTTCAACTGCAGTGGTGCCAGCTACAGCCGAGAGAAATGTGGGGTACCCTTCTCCTGCTG
TGTGCCAGATCCTGCACAAAAAGTCGTGAACACACAGTGTGGCTATGATGTCCGGATTCAGCTGAAGAGC
AAGTGGGATGAGTTCATCTTTACAAAAGGATGCATCCAGGCTCTGGAAGGCTGGCTGCCCAGGAACATCT
ACATTGTGGCTGGTGTCTTCATTGCCATCTCACTGCTGCAGATTTTTGGCATCTTCCTGGCGAGGACCCT
GATCTCAGACATCGAGGCAGTGAAGGCAGGCCATCACTTCTGA

Translation (270 aa):
MHYYRYSNAEVSCWYKYLLFSYNIVFWLAGVVFLGVGLWAWSEKGVLSDLTKVTRLHGIDPVVLVLMVGV
VMFTLGFAGCVGALRENICLLKFFCGAIVLIFFLELAVAVLAFLFQDWVRDRFREFFESNIKSYRDDIDL
QNLIDSLQKANQCCGAYGPEDWDLNVYFNCSGASYSREKCGVPFSCCVPDPAQKVVNTQCGYDVRIQLKS
KWDEFIFTKGCIQALEGWLPRNIYIVAGVFIAISLLQIFGIFLARTLISDIEAVKAGHHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH