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Report for CCDS74394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74394.1 Public Homo sapiens 19 CLPTM1 24 110 108 CCDS HistoryNCBI Gene:1209Re-query CCDS DB by CCDS ID:74394.1Re-query CCDS DB by GeneID:1209See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74394.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541297.6 ENSP00000442011.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541297.6Link to Ensembl Protein Viewer:ENSP00000442011.1Re-query CCDS DB by Nucleotide ID:ENST00000541297Re-query CCDS DB by Protein ID:ENSP00000442011
Original member Current member NCBI NM_001282175.2 NP_001269104.1 Accepted alive Link to Nucleotide Sequence:NM_001282175.2Link to Protein Sequence:NP_001269104.1Re-query CCDS DB by Nucleotide ID:NM_001282175Re-query CCDS DB by Protein ID:NP_001269104Link to BLAST:NP_001269104.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269104.1 655 O96005-4 655 100% 0 0

Chromosomal Locations for CCDS 74394.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44955056 44955085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44961963 44962075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44973087 44973210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44974439 44974597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44977343 44977460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44985218 44985303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44986455 44986575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44987179 44987423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44988080 44988173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44990395 44990585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44990850 44990945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44991238 44991373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44992233 44992400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44992611 44992897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGTCCCGAAAGGCTCATATAACCGAAAAGGTGACCAGCAATGGCAGCATCGGGAGGGACCCGCCAGCGG
AGACCCAGCCTCAGAACCCACCGGCCCAGCCGGCACCCAATGCCTGGCAGGTCATCAAAGGTGTGCTGTT
TAGGATCTTCATCATCTGGGCCATCAGCAGTTGGTTCCGCCGAGGGCCGGCCCCTCAGGACCAGGCGGGC
CCCGGAGGAGCTCCACGCGTCGCCAGCCGCAACCTGTTCCCCAAAGACACTTTAATGAACCTGCATGTGT
ACATCTCAGAGCACGAGCACTTTACAGACTTCAACGCCACGTCGGCACTCTTCTGGGAACAGCACGATCT
TGTGTATGGCGACTGGACTAGCGGCGAGAACTCAGACGGCTGCTACGAGCACTTTGCTGAGCTCGATATC
CCACAGAGCGTCCAGCAGAACGGCTCCATCTACATCCACGTTTACTTCACCAAGAGTGGCTTCCACCCAG
ACCCCCGGCAGAAGGCCCTGTACCGCCGGCTTGCCACAGTCCACATGTCCCGGATGATCAACAAATACAA
GCGCAGACGATTTCAGAAAACCAAGAACCTGCTGACAGGAGAGACAGAAGCGGACCCAGAAATGATCAAG
AGGGCTGAGGACTATGGGCCTGTGGAGGTGATCTCCCATTGGCACCCCAACATCACCATCAACATCGTGG
ACGACCACACGCCGTGGGTGAAGGGCAGTGTGCCCCCTCCCCTGGATCAATATGTGAAGTTCGACGCCGT
GAGCGGTGACTACTATCCCATCATCTACTTCAATGACTACTGGAACCTGCAGAAGGACTACTACCCCATC
AACGAGAGCCTGGCCAGCCTGCCGCTCCGCGTCTCCTTCTGCCCACTCTCGCTTTGGCGCTGGCAGCTCT
ATGCTGCCCAGAGCACCAAGTCGCCCTGGAACTTCCTGGGTGATGAGTTGTACGAGCAGTCAGATGAGGA
GCAGGACTCGGTGAAGGTGGCCCTGCTGGAGACCAACCCCTACCTGCTGGCGCTCACCATCATCGTGTCT
ATCGTTCACAGTGTCTTCGAGTTCCTGGCCTTCAAGAATGATATCCAGTTCTGGAACAGCCGGCAGTCCC
TGGAGGGCCTGTCCGTGCGCTCCGTCTTCTTCGGCGTTTTCCAGTCATTCGTGGTCCTCCTCTACATCCT
GGACAACGAGACCAACTTCGTGGTCCAGGTCAGCGTCTTCATTGGGGTCCTCATCGACCTCTGGAAGATC
ACCAAGGTCATGGACGTCCGGCTGGACCGAGAGCACAGGGTGGCAGGAATCTTCCCCCGCCTATCCTTCA
AGGACAAGTCCACGTATATCGAGTCCTCGACCAAAGTGTATGATGATATGGCATTCCGGTACCTGTCCTG
GATCCTCTTCCCGCTCCTGGGCTGCTATGCCGTCTACAGTCTTCTGTACCTGGAGCACAAGGGCTGGTAC
TCCTGGGTGCTCAGCATGCTCTACGGCTTCCTGCTGACCTTCGGCTTCATCACCATGACGCCCCAGCTCT
TCATCAACTACAAGCTCAAGTCTGTGGCCCACCTTCCCTGGCGCATGCTCACCTACAAGGCCCTCAACAC
ATTCATCGACGACCTGTTCGCCTTTGTCATCAAGATGCCCGTTATGTACCGGATCGGCTGCCTGCGGGAC
GATGTGGTTTTCTTCATCTACCTCTACCAACGGTGGATCTACCGCGTCGACCCCACCCGAGTCAACGAGT
TTGGCATGAGTGGAGAAGACCCCACAGCTGCCGCCCCCGTGGCCGAGGTTCCCACAGCAGCAGGGGCCCT
CACGCCCACACCTGCACCCACCACGACCACCGCCACCAGGGAGGAGGCCTCCACGTCCCTGCCCACCAAG
CCCACCCAGGGGGCCAGCTCTGCCAGCGAGCCCCAGGAAGCCCCTCCAAAGCCAGCAGAGGACAAGAAAA
AGGATTAG

Translation (655 aa):
MSRKAHITEKVTSNGSIGRDPPAETQPQNPPAQPAPNAWQVIKGVLFRIFIIWAISSWFRRGPAPQDQAG
PGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDI
PQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRRRFQKTKNLLTGETEADPEMIK
RAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLDQYVKFDAVSGDYYPIIYFNDYWNLQKDYYPI
NESLASLPLRVSFCPLSLWRWQLYAAQSTKSPWNFLGDELYEQSDEEQDSVKVALLETNPYLLALTIIVS
IVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGVFQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKI
TKVMDVRLDREHRVAGIFPRLSFKDKSTYIESSTKVYDDMAFRYLSWILFPLLGCYAVYSLLYLEHKGWY
SWVLSMLYGFLLTFGFITMTPQLFINYKLKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPVMYRIGCLRD
DVVFFIYLYQRWIYRVDPTRVNEFGMSGEDPTAAAPVAEVPTAAGALTPTPAPTTTTATREEASTSLPTK
PTQGASSASEPQEAPPKPAEDKKKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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