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Report for CCDS52372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52372.1 Public Mus musculus 7 Nucb2 23 108 98 CCDS HistoryNCBI Gene:53322Re-query CCDS DB by CCDS ID:52372.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52372.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032895.14 ENSMUSP00000032895.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032895.14Link to Ensembl Protein Viewer:ENSMUSP00000032895.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032895Re-query CCDS DB by Protein ID:ENSMUSP00000032895
Original member Current member NCBI NM_001130479.2 NP_001123951.1 Accepted alive Link to Nucleotide Sequence:NM_001130479.2Link to Protein Sequence:NP_001123951.1Re-query CCDS DB by Nucleotide ID:NM_001130479Re-query CCDS DB by Protein ID:NP_001123951Link to BLAST:NP_001123951.1
Original member Current member NCBI NM_001360375.1 NP_001347304.1 Accepted alive Link to Nucleotide Sequence:NM_001360375.1Link to Protein Sequence:NP_001347304.1Re-query CCDS DB by Nucleotide ID:NM_001360375Re-query CCDS DB by Protein ID:NP_001347304Link to BLAST:NP_001347304.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123951.1 420 P81117 420 100% 0 0
NP_001347304.1 420 P81117 420 100% 0 0

Chromosomal Locations for CCDS 52372.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 116521837 116521980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116524299 116524406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116525961 116526087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116526300 116526403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116527637 116527822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116528000 116528090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116528818 116528876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116528975 116529067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116533072 116533161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116535862 116536032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116539945 116540026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116540442 116540449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGAGGTGGAGGATCATCCAAGTACAGTACTGTTTTCTCTTGGTTCCGTGCATGCTGACCGCTCTGGAAG
CTGTTCCTATCGATGTGGACAAGACCAAAGTACACAACACTGAGCCAGTGGAAAATGCAAGGATAGAGCC
ACCAGATACTGGACTTTATTATGATGAATACCTCAAGCAAGTGATTGAAGTCTTGGAAACAGATCCACAT
TTCAGAGAAAAGCTCCAGAAAGCAGACATAGAGGAGATAAGGAGCGGGAGGCTGAGTCAAGAGCTGGACT
TAGTAAGTCACAAAGTGAGGACGAGACTGGATGAGCTGAAGAGGCAAGAAGTAGGAAGACTGCGGATGCT
CATCAAAGCTAAGCTGGATGCCCTTCAAGACACTGGCATGAATCACCACCTTCTTCTGAAGCAGTTTGAA
CACCTGAACCACCAGAATCCTAACACATTTGAATCCAGAGATTTGGATATGCTAATCAAAGCAGCTACCG
CGGATCTGGAGCAATATGACCGGACTCGGCATGAAGAGTTTAAGAAGTACGAGATGATGAAGGAACACGA
GCGGAGAGAGTATTTAAAAACGCTGAGTGAGGAGAAGAGGAAAGAAGAAGAGTCTAAGTTTGAAGAGATG
AAGAGGAAGCACGAAGACCACCCCAAAGTTAATCATCCCGGAAGCAAAGATCAACTAAAAGAGGTTTGGG
AAGAGACTGATGGATTGGACCCTAATGACTTTGACCCCAAGACATTTTTCAAATTACATGATGTTAACAA
CGATGGATTCCTGGATGAACAAGAATTAGAAGCACTATTCACAAGAGAGTTGGAGAAAGTGTATAACCCA
CAAAATGCAGAGGACGATATGATAGAAATGGAAGAGGAGAGGCTCAGGATGAGAGAACACGTCATGAGTG
AGATTGATAACAACAAAGACCGATTGGTGACTCTGGAGGAATTCCTGAGAGCTACAGAGAAGAAAGAATT
CCTGGAGCCTGATAGCTGGGAGACACTGGACCAGCAACAGTTATTCACCGAGGACGAGCTTAAAGAGTAT
GAAAGCATTATTGCTATCCAAGAGAACGAGCTTAAGAAGAGGGCGGAAGAGCTGCAGAAACAGAAGGAGG
ATCTGCAGCGGCAGCACGACCACCTCGAGGCGCAGAAGCAGGAGTATCATCAGGCCGTCCAGCACCTGGA
ACAGAAGAAACTTCAACAAGGCATTGCTCCATCAGGGCCAGCGGGAGAGCTGAAGTTTGAGCCACACACA
TAA

Translation (420 aa):
MRWRIIQVQYCFLLVPCMLTALEAVPIDVDKTKVHNTEPVENARIEPPDTGLYYDEYLKQVIEVLETDPH
FREKLQKADIEEIRSGRLSQELDLVSHKVRTRLDELKRQEVGRLRMLIKAKLDALQDTGMNHHLLLKQFE
HLNHQNPNTFESRDLDMLIKAATADLEQYDRTRHEEFKKYEMMKEHERREYLKTLSEEKRKEEESKFEEM
KRKHEDHPKVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNNDGFLDEQELEALFTRELEKVYNP
QNAEDDMIEMEEERLRMREHVMSEIDNNKDRLVTLEEFLRATEKKEFLEPDSWETLDQQQLFTEDELKEY
ESIIAIQENELKKRAEELQKQKEDLQRQHDHLEAQKQEYHQAVQHLEQKKLQQGIAPSGPAGELKFEPHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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