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Report for CCDS16148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16148.1 Public Mus musculus 2 Mtx2 23 108 98 CCDS HistoryNCBI Gene:53375Re-query CCDS DB by CCDS ID:16148.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16148.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028511.7 ENSMUSP00000028511.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028511.7Link to Ensembl Protein Viewer:ENSMUSP00000028511.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028511Re-query CCDS DB by Protein ID:ENSMUSP00000028511
Original member Current member NCBI NM_016804.4 NP_058084.3 Accepted alive Link to Nucleotide Sequence:NM_016804.4Link to Protein Sequence:NP_058084.3Re-query CCDS DB by Nucleotide ID:NM_016804Re-query CCDS DB by Protein ID:NP_058084Link to BLAST:NP_058084.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058084.3 263 O88441 263 100% 0 0

Chromosomal Locations for CCDS 16148.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74826004 74826043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74847238 74847285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74848299 74848345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74859405 74859477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74866871 74866947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74868320 74868412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74868883 74868921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74869304 74869429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74870408 74870484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74876303 74876474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGTCTCTGGTGGCGGAAGCGTTCGTCTCCCAGATCGCAGCTACAGAACCTTGGCCTGAAAATGCGACCT
TGTATCAGCAACTGAGAGGGGAGCAAATTTTGCTTTCTGACAATGCAGCATCTCTTGCTGTGCAGGCATT
TTTGCAGATGTGTAATCTGCCTGTCAAAGTGGTGTGTAGGGCAAATGCGGAATATATGTCTCCATCTGGA
AAAGTTCCTTTTATTCATGTGGGAAATCAAGTAGTGTCAGAACTTGGCCCAATAGTCCAATTTGTTAAAG
CCAAGGGCCATTCTCTTAGTGATGGGTTGGATGAAGTCCAAAAAGCAGAAATGAAAGCCTACATGGAATT
AGTCAACAATATGCTGCTGACTGCAGAGCTGTATCTCCAGTGGTGTGATGAAGCTACAGTAGGGGAGATC
ACTATTGCTAGGTATGGATCTCCTTACCCTTGGCCTCTGAACCACATTTTGGCCTATCAGAAGCAGTGGG
AAGTGAAACGTAAGATGAAAGCTATTGGATGGGGTAACAAGACTCTGGACCAGGTCTTAGAAGATGTAGA
CCAGTGCTGTCAAGCCCTTTCCCAGAGACTGGGAACACAACCATACTTCTTCAATAAGCAACCTACTGAA
CTTGACGCTCTGGTTTTTGGCCATTTGTATACCATTCTTACCACACAATTGACCAGCGATGAACTTTCTG
AGAAGGTGAAAAACTATAGCAACCTCCTGGCTTTCTGTAGAAGAATTGAACAGCACTACTTTGAAGACTG
GGGTAAAGGCAGGTTGTCTTAG

Translation (263 aa):
MSLVAEAFVSQIAATEPWPENATLYQQLRGEQILLSDNAASLAVQAFLQMCNLPVKVVCRANAEYMSPSG
KVPFIHVGNQVVSELGPIVQFVKAKGHSLSDGLDEVQKAEMKAYMELVNNMLLTAELYLQWCDEATVGEI
TIARYGSPYPWPLNHILAYQKQWEVKRKMKAIGWGNKTLDQVLEDVDQCCQALSQRLGTQPYFFNKQPTE
LDALVFGHLYTILTTQLTSDELSEKVKNYSNLLAFCRRIEQHYFEDWGKGRLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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