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Report for CCDS39615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39615.1 Public Mus musculus 6 Tuba8 23 108 98 CCDS HistoryNCBI Gene:53857Re-query CCDS DB by CCDS ID:39615.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39615.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032233.8 ENSMUSP00000032233.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032233.8Link to Ensembl Protein Viewer:ENSMUSP00000032233.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032233Re-query CCDS DB by Protein ID:ENSMUSP00000032233
Original member Current member NCBI NM_017379.2 NP_059075.1 Accepted alive Link to Nucleotide Sequence:NM_017379.2Link to Protein Sequence:NP_059075.1Re-query CCDS DB by Nucleotide ID:NM_017379Re-query CCDS DB by Protein ID:NP_059075Link to BLAST:NP_059075.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059075.1 449 Q9JJZ2 449 100% 0 0

Chromosomal Locations for CCDS 39615.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 121210834 121210836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121220384 121220606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121221301 121221449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121222734 121223414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121225786 121226079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGAGGGAATGCATATCGGTCCATGTGGGTCAAGCCGGAGTTCAGATTGGCAATGCCTGCTGGGAGCTCT
TCTGCTTGGAGCACGGCATCCAGGCGGATGGAACCTTTGGCACTCAGGCCAGCAAGATCAACGATGACGA
CTCCTTTACCACCTTCTTCAGTGAGACTGGCAACGGGAAACACGTGCCCCGGGCTGTCATGGTGGACCTG
GAGCCTACCGTAGTAGATGAGGTGCGGGCAGGAACCTACCGCCAGCTCTTCCATCCTGAGCAGCTGATCA
CAGGCAAGGAGGATGCAGCTAACAATTACGCCCGCGGGCACTATACGGTGGGCAAGGAGAGTATCGATCT
GGTGCTGGACCGAATCCGTAAACTGACTGATGCCTGCTCCGGCTTGCAGGGCTTCCTCATCTTCCACAGC
TTTGGTGGGGGCACAGGATCTGGCTTTACTTCTCTGCTGATGGAGCGCCTTTCCCTAGACTATGGCAAGA
AGTCCAAGCTGGAATTTGCCATCTACCCAGCCCCCCAGGTCTCCACAGCAGTGGTGGAGCCTTACAACTC
CATCCTGACCACCCATACCACCCTGGAACATTCCGACTGTGCTTTCATGGTGGATAACGAAGCCATCTAC
GACATCTGCCGCAGGAACCTGGATATTGAACGCCCCACCTATACCAACCTCAACCGCCTCATCAGCCAGA
TTGTGTCCTCCATCACTGCCTCTCTCCGCTTTGATGGCGCCCTCAATGTGGACCTCACAGAGTTTCAGAC
CAACCTGGTACCCTACCCCCGAATCCACTTCCCGCTGGTCACTTACGCCCCCATCATTTCTGCTGAGAAA
GCCTACCACGAGCAGCTGTCTGTGGCAGAGATAACTAGCTCCTGTTTCGAGCCCAACAGCCAGATGGTGA
AGTGTGACCCACGTCATGGCAAATACATGGCCTGCTGCATGCTCTACCGCGGTGATGTGGTACCCAAGGA
CGTGAATGTCGCCATTGCTGCCATCAAGACCAAGAGAACTATTCAGTTTGTTGACTGGTGTCCCACAGGT
TTCAAGGTGGGCATCAACTACCAGCCACCTACTGTCGTGCCAGGAGGGGACCTGGCCAAAGTCCAGCGAG
CCGTGTGCATGCTGAGCAACACCACAGCAATCGCAGAGGCCTGGGCCCGCCTTGACCATAAGTTTGACCT
CATGTACGCCAAGCGGGCCTTTGTACATTGGTATGTTGGAGAGGGTATGGAAGAAGGAGAGTTTTCTGAG
GCCAGGGAGGACCTGGCTGCTCTGGAGAAGGATTATGAAGAAGTGGGGACTGATTCGTTTGAAGAAGAGA
ATGAGGGGGAGGAATTTTAA

Translation (449 aa):
MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGKHVPRAVMVDL
EPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHS
FGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIY
DICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEK
AYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTG
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
AREDLAALEKDYEEVGTDSFEEENEGEEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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