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Report for CCDS28979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28979.1 Public Mus musculus 17 Gpatch11 23 108 98 CCDS HistoryNCBI Gene:53951Re-query CCDS DB by CCDS ID:28979.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170759.2 ENSMUSP00000126814.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170759.2Link to Ensembl Protein Viewer:ENSMUSP00000126814.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170759Re-query CCDS DB by Protein ID:ENSMUSP00000126814
Original member NCBI NM_181649.6 NP_857632.4 Updated not alive Link to Nucleotide Sequence:NM_181649.6Link to Protein Sequence:NP_857632.4Re-query CCDS DB by Nucleotide ID:NM_181649Re-query CCDS DB by Protein ID:NP_857632
Current member NCBI NM_181649.7 NP_857632.4 Accepted alive Link to Nucleotide Sequence:NM_181649.7Link to Protein Sequence:NP_857632.4Re-query CCDS DB by Nucleotide ID:NM_181649Re-query CCDS DB by Protein ID:NP_857632Link to BLAST:NP_857632.4

Chromosomal Locations for CCDS 28979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78837844 78837902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78838987 78839213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78840078 78840119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78840963 78841083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78841219 78841309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78842113 78842229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78843819 78843900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78845144 78845199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGAAGGAGAGCATGACAGAAGAGGAGGACTATATGTCGGATTCCTTCATTAATGTTCAAGAAGATGTCA
GACCCGGTGTGCCGATGCTGAGGCAGATCCGAGAAGCCCGTCGGAAAGAAGAAAAGCAACAGCAAGCTAA
TCTGAGAAACAGGCAGAAGAGCGTAAAAGAAGAAGAGCGGGAAAGACGTGACATCGGGTTGAAGAATGCA
CTCGGCTGTGAAAACAAAGGGTTCGCTCTGCTCCAAAAGATGGGATACAAGAGTGGGCAGGCTCTAGGCA
AGAGCGGAGATGGTATTGTTGAACCAATTCCTCTCAATGTCAAAACAGGAAAAAGTGGCATAGGTCATGA
GTCATCATTAAAACGGAAAGCGGAGGAGAGGCTGGAAAACTACAGGAGAAAAATTCACATGAAAAACCAA
AATGAAGCAAAGGCCGCCGAGGAGTTTCGGATGCGACTGAAGAGTAAGCAGGATGAAATGAGGCTCGAAG
GAGACCTGAGAAGAAGCCAGCGAGCTTGCCAGCAGCTGGATGCCCAGAAGAATATTCAGGTTCCCAGGGA
GGCGTGGTACTGGCTGAGGCCTGAAGAGGAGACCGAGGAAGAGGAAGAGGAAAAGGAAGAACAGGATGAA
GATGAGTGCCCGAGTGAAGATTTGAGTGTGCTAGAAAAGCTGCAGATCCTCACTGGCTACTTGCGAGAAG
AGCACCTGTATTGCATTTGGTGTGGGACAGCCTATGAAGATAAAGAAGACTTATCTTCGAATTGCCCAGG
ACCGACCTCTGCGGATCACGACTGA

Translation (264 aa):
MKESMTEEEDYMSDSFINVQEDVRPGVPMLRQIREARRKEEKQQQANLRNRQKSVKEEERERRDIGLKNA
LGCENKGFALLQKMGYKSGQALGKSGDGIVEPIPLNVKTGKSGIGHESSLKRKAEERLENYRRKIHMKNQ
NEAKAAEEFRMRLKSKQDEMRLEGDLRRSQRACQQLDAQKNIQVPREAWYWLRPEEETEEEEEEKEEQDE
DECPSEDLSVLEKLQILTGYLREEHLYCIWCGTAYEDKEDLSSNCPGPTSADHD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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