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Report for CCDS23558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23558.1 Public Mus musculus 9 Nme6 23 108 98 CCDS HistoryNCBI Gene:54369Re-query CCDS DB by CCDS ID:23558.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23558.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035053.11 ENSMUSP00000035053.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035053.11Link to Ensembl Protein Viewer:ENSMUSP00000035053.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035053Re-query CCDS DB by Protein ID:ENSMUSP00000035053
Original member Current member EBI ENSMUST00000200468.1 ENSMUSP00000143021.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200468.1Link to Ensembl Protein Viewer:ENSMUSP00000143021.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200468Re-query CCDS DB by Protein ID:ENSMUSP00000143021
Original member NCBI NM_018757.1 NP_061227.1 Updated not alive Link to Nucleotide Sequence:NM_018757.1Link to Protein Sequence:NP_061227.1Re-query CCDS DB by Nucleotide ID:NM_018757Re-query CCDS DB by Protein ID:NP_061227
Current member NCBI NM_018757.2 NP_061227.1 Accepted alive Link to Nucleotide Sequence:NM_018757.2Link to Protein Sequence:NP_061227.1Re-query CCDS DB by Nucleotide ID:NM_018757Re-query CCDS DB by Protein ID:NP_061227Link to BLAST:NP_061227.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061227.1 189 O88425 189 100% 0 0

Chromosomal Locations for CCDS 23558.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109835325 109835414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109839608 109839710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109841476 109841515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109841927 109842087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109842452 109842627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGACCTCCATCTTGCGAAGTCCCCAAGCTCTTCAGCTCACACTAGCCCTGATCAAGCCTGATGCAGTTG
CCCACCCACTGATCCTGGAGGCTGTTCATCAGCAGATTCTGAGCAACAAGTTCCTCATTGTACGAACGAG
GGAACTGCAGTGGAAGCTGGAGGACTGCCGGAGGTTTTACCGAGAGCATGAAGGGCGTTTTTTCTATCAG
CGGCTGGTGGAGTTCATGACAAGTGGGCCAATCCGAGCCTATATCCTTGCCCACAAAGATGCCATCCAAC
TTTGGAGGACACTGATGGGACCCACCAGAGTATTTCGAGCACGCTATATAGCCCCAGATTCAATTCGTGG
AAGTTTGGGCCTCACTGACACCCGAAATACTACCCATGGCTCAGACTCCGTGGTTTCCGCCAGCAGAGAG
ATTGCAGCCTTCTTCCCTGACTTCAGTGAACAGCGCTGGTATGAGGAGGAGGAACCCCAGCTGCGGTGTG
GTCCTGTGCACTACAGTCCAGAGGAAGGTATCCACTGTGCAGCTGAAACAGGAGGCCACAAACAACCTAA
CAAAACCTAG

Translation (189 aa):
MTSILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRTRELQWKLEDCRRFYREHEGRFFYQ
RLVEFMTSGPIRAYILAHKDAIQLWRTLMGPTRVFRARYIAPDSIRGSLGLTDTRNTTHGSDSVVSASRE
IAAFFPDFSEQRWYEEEEPQLRCGPVHYSPEEGIHCAAETGGHKQPNKT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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