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Report for CCDS18891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18891.1 Public Mus musculus 4 Gm13043 23 108 98 CCDS HistoryNCBI Gene:545693Re-query CCDS DB by CCDS ID:18891.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18891.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178489.1 ENSMUSP00000137329.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178489.1Link to Ensembl Protein Viewer:ENSMUSP00000137329.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178489Re-query CCDS DB by Protein ID:ENSMUSP00000137329
Original member Current member NCBI NM_001039595.2 NP_001034684.1 Accepted alive Link to Nucleotide Sequence:NM_001039595.2Link to Protein Sequence:NP_001034684.1Re-query CCDS DB by Nucleotide ID:NM_001039595Re-query CCDS DB by Protein ID:NP_001034684Link to BLAST:NP_001034684.1

Chromosomal Locations for CCDS 18891.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 143515047 143515333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143515810 143516400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143516681 143517248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGAGCTTCCAGGCTCCACCCACACTCCTGAGCTTGGCAGTACAGAGCCTGGCGAAGAATGAAGCCTTGG
CCATCAATGCTCTGCAGGAACTGCCCAGGGAGTTGTTCCCACCACTCTTCAAGGCAGCCTTCACTGGCAG
ACACACGAAGATACTGAAGGAAATGGTGGGAGCCTGGCCTTTACCTTGCCTCCCTGTGGGGGCACTGATG
AACGTCCCTGACATGACAATATTGCAAGCTGTGCTGGATGGTGTAGACATGCAGCTGACAGGAAATTTTC
ACCCAAGAAAGAGGAAGCTTCAAGTGCTGGACCTGAGAAATGTGCACCATCACTTCTGGGATGTTTCAGC
TGGACCAGAGGATGGAGACGGCTCAGCAGAGACAGTGTGTCAAAAGCAGAAAGCAACACGCCCTCATAGT
TATGCACTGAGGCGACGTTTAAAGGTGGTCACTGACCTTTGCCTTCAGTTTGATCTAGAGGAACATCAAA
CTTACTTCTTGCAGTGGGCACAGGAGAGAAGAGGTTCCCTGAACCTGTGCTGTGTGAAGATGCAAATTAG
GGAATTGCCTTTGCACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAA
TTGCATATAGACTGGACTCTGTCCACACTGGCAAGCTTTGCACCTTGCCTTGGTCAGATCAAGAATCTTC
GTAAACTCCATCTAACACTAGTCCACGAGAAACTCTTCACTTTTCTATGTACATCAACAGACATAAAGGA
GAAGAGTGTCACCAAGTTCATTTCTCAGTTCTCCAAACTCAACAGTCTCCAGCATCTCGACCTGGCTGGC
CTCTACTTTCTCACTGGCCACATGAATGAATTGCTCGTGTGTCTGAAGACTCCGCTGGAGTTCCTGTCAA
TTGCTCTCTGCAAGTACTCACAGTCAGACATGGAGTCCTTTGCCCAGTGTCAGAGTCTCCATCATCTCAA
ACATCTGCATTTGGCAGGTGTCATTTTGCATGATCTGAGTCTTGTGCCTCTCGGAATTTTCCTAGAAAAT
GTTGCAAACACTCTGAAGACCTTGGAATTAGAACATTGTAGGATGACAGACTCTCAGGTCAGCGCTTTTA
TCCCTGCCCTGAATAAGTGCTCTCAGCTCATCGAGGTCAACTTCTGTGACAATGACATCTCCATGCCTGT
CCTAACGAACCTTCTGCATCACACAGCCAACCTAAGCCAGCTGATCATGGAGCTTTATCCTGCTCCTCTG
GAGTGCTATGAAACCGGTTTTGTTCTTAGACCAGAGAGAATTGTCCAGCTTTCTTCTGAGCTCATGAACA
TACTTTGCACTGTTAGGCAGCCCCACTCTATCTGTTTTGCCTCTCAGTTATGCCTTATATGTTCACAGCG
CTGTACATATGGTCTGGAGACCAGACTTTGCCATTGTTGCCAGTAA

Translation (481 aa):
MSFQAPPTLLSLAVQSLAKNEALAINALQELPRELFPPLFKAAFTGRHTKILKEMVGAWPLPCLPVGALM
NVPDMTILQAVLDGVDMQLTGNFHPRKRKLQVLDLRNVHHHFWDVSAGPEDGDGSAETVCQKQKATRPHS
YALRRRLKVVTDLCLQFDLEEHQTYFLQWAQERRGSLNLCCVKMQIRELPLHTVRKILQIFQPYCIEELE
LHIDWTLSTLASFAPCLGQIKNLRKLHLTLVHEKLFTFLCTSTDIKEKSVTKFISQFSKLNSLQHLDLAG
LYFLTGHMNELLVCLKTPLEFLSIALCKYSQSDMESFAQCQSLHHLKHLHLAGVILHDLSLVPLGIFLEN
VANTLKTLELEHCRMTDSQVSAFIPALNKCSQLIEVNFCDNDISMPVLTNLLHHTANLSQLIMELYPAPL
ECYETGFVLRPERIVQLSSELMNILCTVRQPHSICFASQLCLICSQRCTYGLETRLCHCCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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