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Report for CCDS39852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39852.1 Public Mus musculus 7 Zfp607a 23 108 98 CCDS HistoryNCBI Gene:545938Re-query CCDS DB by CCDS ID:39852.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053722.8 ENSMUSP00000051496.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053722.8Link to Ensembl Protein Viewer:ENSMUSP00000051496.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000053722Re-query CCDS DB by Protein ID:ENSMUSP00000051496
Original member Current member EBI ENSMUST00000205715.1 ENSMUSP00000146006.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205715.1Link to Ensembl Protein Viewer:ENSMUSP00000146006.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205715Re-query CCDS DB by Protein ID:ENSMUSP00000146006
Original member Current member EBI ENSMUST00000205534.1 ENSMUSP00000146261.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205534.1Link to Ensembl Protein Viewer:ENSMUSP00000146261.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205534Re-query CCDS DB by Protein ID:ENSMUSP00000146261
Original member NCBI NM_001024726.2 NP_001019897.2 Updated not alive Link to Nucleotide Sequence:NM_001024726.2Link to Protein Sequence:NP_001019897.2Re-query CCDS DB by Nucleotide ID:NM_001024726Re-query CCDS DB by Protein ID:NP_001019897
Current member NCBI NM_001024726.3 NP_001019897.2 Accepted alive Link to Nucleotide Sequence:NM_001024726.3Link to Protein Sequence:NP_001019897.2Re-query CCDS DB by Nucleotide ID:NM_001024726Re-query CCDS DB by Protein ID:NP_001019897Link to BLAST:NP_001019897.2

Chromosomal Locations for CCDS 39852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27862557 27862589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27863389 27863515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27865570 27865668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27877766 27879567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGGCCAGCTCCAGTTCTCAACACATGGTCTGTGGGTCAGTGACATTTAGGGATGTGGCTGTTGACTTCT
CTCAGGAGGAGTGGGCCTGCCTGGATGCTACTCAGAAGGTCTTATACAGGGACATGATGTTGGAGACCTA
CAGCAACCTGGTCGCAGTGGTGGGACGTTGCATTTCCAAGCCAGATCTGATCGTCTTACTAGAGCAGGAG
AAAGAGCCCTGGATGGCTGTGAAGGAAGAAACAGACAGGCCGAGCCCAGATTTGGAGTTATGTTATGAAG
CTGAAAATATGTCTCCAGAAAATCAAACCTATGATATAAATTTATTCAAACAGAGAATAAAGCAATTCAG
TAAAACTTTTGATCTCAAGATTTGCAGTTTTACTAGTGGCCCCAACTATAATACATCCAAGGGACTACAG
AGTTCTCAAGAAGGCGATGATAATCAAAAGATTACTAACAAGGAAGAAATACCCACTCACACCTGCCAGA
CTCTTGCTCACAATACAGAAAAGGCATATGAGTGTAAAGAGTGTGGGAAGTGCTTTGGTTGTAGGTCAAC
TCTTACTCAGCATCAGAGTGTTCATGCTGGAGAGAAACCCTATGAATGTGAGGAGTGTGGGAAGGCCTTC
AGACTCCCCCAACAGCTCACAAGACATCAGAAGTCTCACAGTGGTGAGAGACCTTTTGAATGTAATGAAT
GCGGAAAGGCTTTTCATCTTCCCGACCTGCTTAAATATCATAAAGTCATTCATACAGATGAAAAACCTTT
TGAATGTGAAGTATGTGGGAAGTCTTTCAAGCGCGTCTCCCACCTTGTTGAACACAGGACTATTCACGCT
GGTGTGAAACCATATGAGTGTAGTGAGTGTGCGAAAGCCTTTAAACGTCGTTCATACCTAATGCAACATC
AGAAAATCCATTCTGGTGAGAGACCCTTTCAGTGTAAGGACTGTGGGAAGAGCTTCATCGTTCTGGCTCA
GCTCACACGGCACCAGAACATTCACACTGAAGACAAATCATTTGAATGTAAGCATTGTGGGAAGATATTC
AGCTGTGGCTCATTCCTCTTGCGGCACCAGAGTATTCATACCAATGAGAAGCCCTTTGAATGCAATGTAT
GTGGGAAGGCTTTTAGGCTTCAGGTATACCTTTCCGAGCATCGGAAAACTCACACTGATGAGAGACCTTT
TGAGTGTAAGCTGTGTGGGTCAGCCTTTAGACGTAAGGACCAGCTTAGTGAACATCAGAAAATCCATACC
AACGTGAAACCCTATCAGTGCAAGGAATGTGGGAACTTATTTCGCAGAAAATCAAGTTTTATTGAGCATC
AGAGTATTCACAGTGAAAAGAAGCCCTTCAACTGTAAGGACTGTGGGAAAGTCTTTAGACTTAATACACA
TCTCATGAGACATCAGAAATCTCACAGTGGTGAGAGACCTTTTGAGTGCAAAGAATGTGGAAAGGCTTTT
CATCTTCCCAGTCAGCTTACTTACCATAAAACTGTCCATACAAATCAAAAACCATTTGCTTGTGAAGAAT
GTGGGAAGTCCTTCAAGCATGTCTCCAGCCTTATTGAACATAGGGTTATCCATGCCGGTTTGAAACCATA
TGAATGTGGTGAGTGTGGGAAAGCTTTTAATCATCGCTCAAACCTCAAGCAACATCAGAAAATTCATTCT
GATGAGAGACCCTTTGAGTGTAAGGACTGTGGGAAGGGCTTCACTGTTCTGGCTCAGCTTACTCGGCACC
AGAGCATTCACACTGGAGAAAAATCATTTGAATGTGAGCAGTGTGGGTCCAGTTTCCGACTTAAGTCCCA
ACTCAATCAACATCAGAGAATCCATACTGATGTGAAACCCTATCAGTGCAAGGAATGTGGAAAGGGCTTT
GTTCGTGGTACAGCCCTCAGGATTCATCAGAGAATCCACACTGGTGAGAAACCATTTCAATGTAACAAAT
GTGGGGAAGCCTTTCAATACCACTACCAGTTTCTTGCTCATTTTAGAACTCACACTGGCAAGAAGCCTTC
TGAATGTGAAGAATTGTGGCGGAGACCTTAA

Translation (686 aa):
MASSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRDMMLETYSNLVAVVGRCISKPDLIVLLEQE
KEPWMAVKEETDRPSPDLELCYEAENMSPENQTYDINLFKQRIKQFSKTFDLKICSFTSGPNYNTSKGLQ
SSQEGDDNQKITNKEEIPTHTCQTLAHNTEKAYECKECGKCFGCRSTLTQHQSVHAGEKPYECEECGKAF
RLPQQLTRHQKSHSGERPFECNECGKAFHLPDLLKYHKVIHTDEKPFECEVCGKSFKRVSHLVEHRTIHA
GVKPYECSECAKAFKRRSYLMQHQKIHSGERPFQCKDCGKSFIVLAQLTRHQNIHTEDKSFECKHCGKIF
SCGSFLLRHQSIHTNEKPFECNVCGKAFRLQVYLSEHRKTHTDERPFECKLCGSAFRRKDQLSEHQKIHT
NVKPYQCKECGNLFRRKSSFIEHQSIHSEKKPFNCKDCGKVFRLNTHLMRHQKSHSGERPFECKECGKAF
HLPSQLTYHKTVHTNQKPFACEECGKSFKHVSSLIEHRVIHAGLKPYECGECGKAFNHRSNLKQHQKIHS
DERPFECKDCGKGFTVLAQLTRHQSIHTGEKSFECEQCGSSFRLKSQLNQHQRIHTDVKPYQCKECGKGF
VRGTALRIHQRIHTGEKPFQCNKCGEAFQYHYQFLAHFRTHTGKKPSECEELWRRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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