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Report for CCDS49230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49230.1 Public Mus musculus 13 Psmg4 23 108 98 CCDS HistoryNCBI Gene:69666Re-query CCDS DB by CCDS ID:49230.1Re-query CCDS DB by GeneID:69666See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147632.2 ENSMUSP00000115881.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147632.2Link to Ensembl Protein Viewer:ENSMUSP00000115881.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147632Re-query CCDS DB by Protein ID:ENSMUSP00000115881
Original member Current member NCBI NM_001101430.2 NP_001094900.1 Accepted alive Link to Nucleotide Sequence:NM_001101430.2Link to Protein Sequence:NP_001094900.1Re-query CCDS DB by Nucleotide ID:NM_001101430Re-query CCDS DB by Protein ID:NP_001094900Link to BLAST:NP_001094900.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094900.1 123 P0C7N9 123 100% 0 0

Chromosomal Locations for CCDS 49230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 34163076 34163249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34166061 34166136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34177981 34178102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGAGGAGTCTCGGGCCGCTGCGGACGCGGACGTGTCGCTTCACAACTTCAGTGCAAGGCTGTGGGAGC
AGCTGGTCCACTTTCATGTCATGCGGCTGACGGATTCGCTCTTCCTGTGGGTGGGAGCAACGCCGCATCT
ACGCAACCTCGCAGTGGCCATGTGCAGCCGCTACGACCCCATCCCTGTGTGCACCTCCCTTTTTGGAGAC
ACTTCTGATACAACTTCCACCGGCCTTGCTCAGCGCTTAGCCCGGAAGACCAGCAAACAGGTGTTTGTCA
GCTACAACCTCTCCAACACAGACAGTAACTTCACGTTACTCGTAGAAAACAGGATTAAGGAAGAAATGGA
GACCTTTCCGGAAAAGTTCTGA

Translation (123 aa):
MEESRAAADADVSLHNFSARLWEQLVHFHVMRLTDSLFLWVGATPHLRNLAVAMCSRYDPIPVCTSLFGD
TSDTTSTGLAQRLARKTSKQVFVSYNLSNTDSNFTLLVENRIKEEMETFPEKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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