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Report for CCDS48676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48676.1 Public Mus musculus 10 Plxnc1 23 108 98 CCDS HistoryNCBI Gene:54712Re-query CCDS DB by CCDS ID:48676.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48676.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099337.4 ENSMUSP00000096939.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099337.4Link to Ensembl Protein Viewer:ENSMUSP00000096939.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099337Re-query CCDS DB by Protein ID:ENSMUSP00000096939
Original member Current member NCBI NM_018797.3 NP_061267.1 Accepted alive Link to Nucleotide Sequence:NM_018797.3Link to Protein Sequence:NP_061267.1Re-query CCDS DB by Nucleotide ID:NM_018797Re-query CCDS DB by Protein ID:NP_061267Link to BLAST:NP_061267.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061267.1 1574 Q9QZC2 1574 100% 0 0

Chromosomal Locations for CCDS 48676.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 94793186 94793290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94794416 94794490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94794586 94794726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94796370 94796517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94797984 94798147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94799271 94799378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94799474 94799505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94801461 94801515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94810665 94810768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94813123 94813300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94827171 94827317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94831343 94831541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94833288 94833412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94833648 94833686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94837502 94837605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94837918 94838019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94841465 94841567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94843723 94843908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94844182 94844385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94847515 94847614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94849822 94850001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94852589 94852728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94864717 94864812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94864931 94865033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94866911 94866998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94870975 94871119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94882518 94882632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94906465 94906565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94910536 94910670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94922630 94922770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94943517 94944578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4725 nt):
ATGGAGGTCTCCCGGAGGAAGACGCCGCCGCGCCCCCCGTACCCCGCCGCACCGTTGCCCCTGATCGCCT
ATCTGCTGGCGCTGGCAGCGCCCGCCCGGGGCGCGGACGAGCCGGTGTGGCGATCTGAGCAAGCCATCGG
AGCCATCGCGGCGAGCCGGGCGGACGGCGTGTTCGTGGCGAGCGGCAGCTGCCTGGACCAGCTGGACTAC
AGCCTGAAGAACAGGCTCTCTCGCCTATACCGGGACCAAGCGGGCAACTGCACGGAGCCCGTCTCGTTGG
CGCCCCCCGCGCGGCCCCGGCCCGGGAGCAGCTTCAGCAAGCTACTGCTGCCCTACCGCGAGGGGGCGAC
CGGCCTCGAGGGGCTGCTGCTCACCGGCTGGACCTTCGACCGGGGCGCCTGCGAGGTGCGGCCCCTGGGC
AACCTGAACCGCAGCTCCCTGCGCAACGGCACCGAGGTGGTGTCATGTCACCCGCAGGGTTCGACGGCTG
GTGTGGTGTACCGCGCGAGTGGCACCGACCTCTGGTACCTGGCGGTGGCCGCCACCTATGTGCTGCCGGA
GCCGGAGACCGCGAACCGCTGCAACCCCGCAGCATCCGATCGCGACACGGCTATCGCGCTCAAGAACACG
GAGGGGCGCAGTCTGGCCACGCAGGAGCTGGGCCGCCTGAAACTGCGCGGTAGTGCGGGCAGCCTGCACT
TCGTGGACGCCTTTCTCTGGAACGGCAGTGTCTACTTCCCCTACTATCCCTACAACTACACGAGTGGCGC
TGCCACCGGCTGGCCCAGCATGGCGCGCATCGCGCAGAGCACAGAGGTGCTGTTCCAGGGCCAGGCTGCC
CTCGACTGCGACCACGGCCACCCTGAGGGCCGCCGCCTACTGCTTTCCTCCAGCCTGGTGGAGGCTGTGG
ACATCTGGGCCGGCGTGTTCAGCGCGGCCACTGGAGAGGGCCAGGAGAGGCGCTCCCCCGCCACCACGGC
TCTCTGCCTCTTCAGGATGAGTGAGATCCAGGCGCACGCCAGGAGCTGCAGCTGGGACTTTCAAGCGACT
GAGCACAACTGCAAAGAAGGGGATCGGCCTGAACGGGTCCAGCCAATTGCATCGTCTACACTGATCCACT
CTGACCTGACGTCTGTTTATGGCACCGTGGTGATGAACAGGACTGTTCTGTTCTTGGGGACCGGAGATGG
CCAGTTACTGAAGGTTGTTCTTGGTGAGAATTTGACTTCAAACTGTCCAGAGGTTATTTATGAAATTAAA
GAAGAAACGCCTGTGTTCTACAAGCTCGTTCCTCATCCCATGAAGAACATCTACATCTACCTAACAGCTG
GGAAGGAGGTGAGAAGAATTCCTGTTGCAAACTGCAGTAAACGGAAATCCTGTTCAGAGTGCTTAGCAGC
GGCAGACCCCCACTGTGGCTGGTGCCTCCCGTTACAAAGGTGCACTTTTCAAGGGGATTGCACACATGCT
GGGAGCTTTGAAAACTGGCTGGATATTTCATCAGGACCTAAAAAATGCCCGAAAATTCAGATACTTCGAA
GCCTCCGAGAGAGAACCACAGTGACCATTGTGGGAAGCATCTCCGCAAGACACTCGGAGTGCGTGGTGAA
GAACGCAGACACGGGCAAGCTGCTCTGCCAGGGGAGAAGCCAACTGAACTGGACCTGTGCCTGCAATATC
CCCAGCAGACCCAGCTATAATGTCTTAGTTGTCAATGCGACCTTCTCCTTTCCGTCTTGGAACTTATCAG
AAAGATTCAACTTCACCAACTGTGCGTCATTAAAAGAATGCCCGGCGTGTATCAGAAGCGGCTGTGCTTG
GTGTAAACGGGACAAGAAATGCATCCACCCCTTCACCCCCTGCGAACCATCAGACTATGAGAGGAATCAG
GAGCTCTGTCAAGTTGCTGTGGAGAAGTCGCCCAAGGACTCAGGAGGAGGAAGAGTCAAGGAGAGCAAGA
GAAACAGAACTGACGGGGCTGTGCAGGTCTTCTACATTAAGGCCATTGAGCCACAAAAAATATCAACCTT
AGGGAAAAGCAATGTGATTGTTACTGGAGCAAACTTCACCCAGGCGTCAAATATCACCATGATCCTGCGA
GGAACCAGTACCTGCGAGAGGGATGTGATCCGGGTTAGCCATGTGCTAAATGACACGCATATGAAATTCT
CACTTCCATCAAGCCGCAAAGAAATGAAAGACGTTTGCATCCAGTTTGACGGTGGGACCTGCTCGTCTGC
AGGGGCTCTGTCCTACATTGCTCTGCCACATTGTTCCCTGATAGTTCCTGCCACCACCTGGATCAGCGGT
GGGCAAAACATAACCATCATGGGCAGAAATTTTGACGTCATCGACAACCTCATCATTTCACACGAGCTGA
AGGGAAACGCAAATGTGAACATAAATGTCTCTGAATACTGCGCAGCAACTTTCTGCAGGTTTCTAGCTCC
TAATTTAAAGAGCTCCAAAGTACGTACAAACGTGGCCGTGAAGCTGAGGGTCCAAGACACCTACTTGGAC
TGTGGAACGCTGCAATACCTCGAGGACCCCAGATTTACAGGGTACCGAGTGGAGTCAGAGATTGATACAG
AATTGGAAGTAAAAATTCAAAAAGAAAATGACAATTTCAACATTTCCAAGGATGACATTGATATTACTCT
CTTCCATGGGGAAAATAAACAATTTAATTGCAGTTTTGAAAATATTACTAGAAACCAGGATCTCACAACC
ATCCTTTGCAAGATCAAGAGTATCAAGAATGCAAACACCATCGCTAGCTCCTCTAAAAAAGTCCGCGTCA
AGCTGGGAAACCTGGAACTCTATGTGGAACAGGAATCAGTTCCTTCCACGTGGTATTTTCTAATCGCGCT
TCCAATCTTGCTGGCCATTGTCATCGTTGTGGCTGTGGTGGTGACGAGGTACAAATCCAAGGAGCTCAGT
CGAAAGCAGAGCCAACAGCTGGAGCTGCTGGAGAGCGAACTCCGGAAGGAGATCCGCGACGGCTTTGCCG
AGCTCCAGATGGATAAGTTGGATGTGGTTGATAGCTTTGGAACAGTACCCTTCCTTGACTACAAACATTT
CGCTCTGAGAACTTTCTTCCCTGAGTCAGGTGGCTTCACGCACATCTTCACTGAAGATATGCACAACAGA
GACGCCAATGACAAGAACGAGAGCCTCACAGCCTTGGATGCCCTCATATGTAATAAAAGCTTCCTGGTTA
CCGTCATCCATACCCTGGAGAAGCAGAAGAACTTCTCAGTAAAGGACAGGTGTCTCTTCGCCTCCTTCCT
AACCATTGCTCTGCAAACCAAACTGGTCTACCTGACCAGCATCCTGGAGGTGCTGACCAGGGACCTGATG
GAGCAGTGCAGTAATATGCAACCAAAGCTGATGCTGAGGCGCACGGAGTCTGTGGTGGAGAAGCTCCTGA
CGAACTGGATGTCTGTCTGTCTCTCCGGTTTCCTCCGGGAGACTGTTGGAGAGCCATTCTATTTGCTGGT
GACGACCCTGAACCAGAAAATAAACAAGGGTCCCGTGGACGTGATCACCTGCAAAGCGCTGTACACCCTG
AACGAAGACTGGCTACTCTGGCAGGTCCCCGAATTCAACACTGTGGCATTAAATGTCGTCTTTGAAAAAA
TCCCGGAAAACGAGAGTGCAGATGTCTGCCGGAATATTTCAGTCAACGTTCTTGACTGCGATACCATAGG
CCAAGCCAAAGAAAAGGTTTTCCAAGCCTTCCTAAGCAAAAATGGTTCTCCATACGGACTCCAGCTCAAT
GAGATTGGTCTTGAGCTTCAGGTGGGAACACGGCAGAAAGAACTCCTGGACATTGACAGTTCCTCTGTGA
TTCTTGAAGATGGAATAACCAAGCTAAACACCATTGGCCACTATGAGATATCAAATGGATCCACTATAAA
AGTCTTTAAGAAGATAGCAAATTTTACTTCAGATGTGGAGTACTCAGATGACCACTGCCACTTGATTCTG
CCAGATTCAGAAGCATTCCAAGTAGTTCAAGGGAAGAGACATCGAGGGAAACACAAGTTCAAAGTAAAAG
AAATGTATCTGACCAAGCTGCTGTCGACCAAGGTGGCAATTCACTCTGTGCTTGAGAAACTCTTCCGAAG
CATTTGGAGTTTGCCCAATAGCAGGGCCCCATTTGCTATAAAATACTTCTTTGACTTTCTGGATGCCCAA
GCTGAAAACAAAAAAATCACAGACCCTGATGTTGTACACATCTGGAAAACAAACAGCCTCCCTCTTCGAT
TCTGGGTAAACATCCTGAAGAACCCTCAGTTTGTCTTTGACATTAAGAAGACACCACACATAGACAGCTG
TTTGTCAGTGATTGCCCAAGCATTCATGGATGCCTTTTCTCTCACAGAACAGCAACTGGGGAAGGAAGCA
CCAACCAATAAACTTCTCTATGCCAAGGATATACCAACCTACAAAGAGGAAGTGAAGTCTTACTACAAAG
CAATCAGGGATTTGCCTCCATTGTCATCTTTAGAAATGGAAGAATTCTTAACTCAGGAATCTAAGAAACA
TGAAAATGAATTTAATGAAGAAGTGGCCTTGACAGAAATCTACAAATACATCGTAAAGTATTTTGATGAG
ATTCTAAATAAACTAGAAAGAGAACGAGGGCTGGAAGAAGCTCAGAAACAACTCTTGCATGTAAAAGTCT
TATTTGATGAAAAGAAGAAATGCAAGTGGATGTAA

Translation (1574 aa):
MEVSRRKTPPRPPYPAAPLPLIAYLLALAAPARGADEPVWRSEQAIGAIAASRADGVFVASGSCLDQLDY
SLKNRLSRLYRDQAGNCTEPVSLAPPARPRPGSSFSKLLLPYREGATGLEGLLLTGWTFDRGACEVRPLG
NLNRSSLRNGTEVVSCHPQGSTAGVVYRASGTDLWYLAVAATYVLPEPETANRCNPAASDRDTAIALKNT
EGRSLATQELGRLKLRGSAGSLHFVDAFLWNGSVYFPYYPYNYTSGAATGWPSMARIAQSTEVLFQGQAA
LDCDHGHPEGRRLLLSSSLVEAVDIWAGVFSAATGEGQERRSPATTALCLFRMSEIQAHARSCSWDFQAT
EHNCKEGDRPERVQPIASSTLIHSDLTSVYGTVVMNRTVLFLGTGDGQLLKVVLGENLTSNCPEVIYEIK
EETPVFYKLVPHPMKNIYIYLTAGKEVRRIPVANCSKRKSCSECLAAADPHCGWCLPLQRCTFQGDCTHA
GSFENWLDISSGPKKCPKIQILRSLRERTTVTIVGSISARHSECVVKNADTGKLLCQGRSQLNWTCACNI
PSRPSYNVLVVNATFSFPSWNLSERFNFTNCASLKECPACIRSGCAWCKRDKKCIHPFTPCEPSDYERNQ
ELCQVAVEKSPKDSGGGRVKESKRNRTDGAVQVFYIKAIEPQKISTLGKSNVIVTGANFTQASNITMILR
GTSTCERDVIRVSHVLNDTHMKFSLPSSRKEMKDVCIQFDGGTCSSAGALSYIALPHCSLIVPATTWISG
GQNITIMGRNFDVIDNLIISHELKGNANVNINVSEYCAATFCRFLAPNLKSSKVRTNVAVKLRVQDTYLD
CGTLQYLEDPRFTGYRVESEIDTELEVKIQKENDNFNISKDDIDITLFHGENKQFNCSFENITRNQDLTT
ILCKIKSIKNANTIASSSKKVRVKLGNLELYVEQESVPSTWYFLIALPILLAIVIVVAVVVTRYKSKELS
RKQSQQLELLESELRKEIRDGFAELQMDKLDVVDSFGTVPFLDYKHFALRTFFPESGGFTHIFTEDMHNR
DANDKNESLTALDALICNKSFLVTVIHTLEKQKNFSVKDRCLFASFLTIALQTKLVYLTSILEVLTRDLM
EQCSNMQPKLMLRRTESVVEKLLTNWMSVCLSGFLRETVGEPFYLLVTTLNQKINKGPVDVITCKALYTL
NEDWLLWQVPEFNTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKVFQAFLSKNGSPYGLQLN
EIGLELQVGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGSTIKVFKKIANFTSDVEYSDDHCHLIL
PDSEAFQVVQGKRHRGKHKFKVKEMYLTKLLSTKVAIHSVLEKLFRSIWSLPNSRAPFAIKYFFDFLDAQ
AENKKITDPDVVHIWKTNSLPLRFWVNILKNPQFVFDIKKTPHIDSCLSVIAQAFMDAFSLTEQQLGKEA
PTNKLLYAKDIPTYKEEVKSYYKAIRDLPPLSSLEMEEFLTQESKKHENEFNEEVALTEIYKYIVKYFDE
ILNKLERERGLEEAQKQLLHVKVLFDEKKKCKWM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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