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Report for CCDS11133.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11133.2 Public Homo sapiens 17 BORCS6 24 110 108 CCDS HistoryNCBI Gene:54785Re-query CCDS DB by CCDS ID:11133.2See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 11133.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11133.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389017.6 ENSP00000373669.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389017.6Link to Ensembl Protein Viewer:ENSP00000373669.4Re-query CCDS DB by Nucleotide ID:ENST00000389017Re-query CCDS DB by Protein ID:ENSP00000373669
Original member Current member NCBI NM_017622.3 NP_060092.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017622.3Link to Protein Sequence:NP_060092.2Re-query CCDS DB by Nucleotide ID:NM_017622Re-query CCDS DB by Protein ID:NP_060092Link to BLAST:NP_060092.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060092.2 357 Q96GS4 357 100% 0 0

Chromosomal Locations for CCDS 11133.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8189067 8190140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGAGTCGTCTCGGGGGCGGCCCGGGCCCGAGACGGACCTTCTGGCTGTAGCGGAACATCAGGCCCTAG
TCTTTGGCGGCGGGCCGGGCCGAACGTCCTCTGAGCCGCCCGCAGGCCTCCGGGTGTCCGGGGAGGAAGA
GACCGAGAACGTTGGGGGCGCGAACCGCCACCCCAGGACGTCCCCGAAGACGTCAAGCTGCGGCGTCGTC
CACCGGCCGGAACGGGAGGCTCTGGAGAACGAGCCCGGCCCTCAAGGGACGCTGTCTGGGGCCGGGAGCC
GCAGGGGGGCGCCGGGTGCAGAGCACGAACCTTCCCTGTCCTCCCGGCACAAGAACCCGGCGCCGCCCGA
GGGCAAGCCCTCCTCCGGGAGGGACTGCCGTCGAGGGGGACCAGGCGGCGGGATGGATGTTGAGCAGCAG
GAGGAGGAAGACAACGACGAGGAGGCGGCCGCGGGCAGCAGAGCCGGCCGCTCGTTCTCCAGCCGTCTTC
AGGACAGCCGCAGCCTGGACGGGCTGAGCGAGGCGTGCGGTGGCGCCGGGTCCTCAGGGAGTGCCGAGTC
CGGCGCGGGCGGCGGACGCCGCGCCACCATCTCCAGTCCCCTGGAGCTCGAAGGCACAGTGAGCCGCCAC
GGCGACCTTACCCACTTTGTCGCCAACAACCTGCAACTCAAGATCCGTCTGAGCGGCGCGCCTCCACCCC
CGCCTTCTGCCCCTGCGCGGCCCTGCCCAGCGCCTGCACCCACACCCACACCGGCCATTCCCCCAATCGA
CCCCGAGGTGCTGCGGGATCTGGAGCGGTTGAGTCGGGAGCTGGGAGGCCGGGTGGACCGTCTGCTTCGC
GGTCTGGGTGGCGCGGTGCAGGAGCTGACGGCGCTGAGCGTGGGTTGCATCCAGACCTACCGCGATGCTG
TGGACTCCTTAGGTGAAGCCGTGGACATGAGCATCAAGGGCATGTACACCCTGCTGGCGCGCTGCGAGGA
GCTGGAGCGGGCTCTGCAGCCGGTTCAGGGGCTGGCGCGCCAAGTCCGGGATATCCGACGTACTCTGGAG
GTGTTGGAGGCCCTGTGCAAGTGA

Translation (357 aa):
MESSRGRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVV
HRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQQ
EEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGGRRATISSPLELEGTVSRH
GDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAPAPTPTPAIPPIDPEVLRDLERLSRELGGRVDRLLR
GLGGAVQELTALSVGCIQTYRDAVDSLGEAVDMSIKGMYTLLARCEELERALQPVQGLARQVRDIRRTLE
VLEALCK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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