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Report for CCDS34680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34680.1 Public Homo sapiens 7 SAMD9 24 110 108 CCDS HistoryNCBI Gene:54809Re-query CCDS DB by CCDS ID:34680.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34680.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379958.3 ENSP00000369292.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379958.3Link to Ensembl Protein Viewer:ENSP00000369292.2Re-query CCDS DB by Nucleotide ID:ENST00000379958Re-query CCDS DB by Protein ID:ENSP00000369292
Original member Current member EBI ENST00000620985.4 ENSP00000484636.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620985.4Link to Ensembl Protein Viewer:ENSP00000484636.1Re-query CCDS DB by Nucleotide ID:ENST00000620985Re-query CCDS DB by Protein ID:ENSP00000484636
Original member Current member NCBI NM_001193307.2 NP_001180236.1 Accepted alive Link to Nucleotide Sequence:NM_001193307.2Link to Protein Sequence:NP_001180236.1Re-query CCDS DB by Nucleotide ID:NM_001193307Re-query CCDS DB by Protein ID:NP_001180236Link to BLAST:NP_001180236.1
Original member Current member NCBI NM_017654.4 NP_060124.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017654.4Link to Protein Sequence:NP_060124.2Re-query CCDS DB by Nucleotide ID:NM_017654Re-query CCDS DB by Protein ID:NP_060124Link to BLAST:NP_060124.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180236.1 1589 Q5K651 1589 100% 0 0
NP_060124.2 1589 Q5K651 1589 100% 0 0

Chromosomal Locations for CCDS 34680.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 93101328 93106097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4770 nt):
ATGGCAAAGCAACTTAACCTTCCAGAAAATACAGATGATTGGACAAAAGAGGATGTAAATCAGTGGTTAG
AA
AGTCATAAGATTGACCAAAAACACAGGGAAATTTTGACTGAACAAGACGTGAATGGAGCAGTCTTGAA
G
TGGTTAAAAAAAGAACATCTTGTTGATATGGGCATCACACATGGACCAGCTATTCAAATAGAAGAACTA
TTC
AAAGAATTGCGGAAAACAGCCATTGAAGATTCGATTCAGACATCTAAGATGGGAAAGCCCAGTAAAA
AT
GCTCCTAAAGACCAAACTGTGTCTCAAAAGGAACGTAGAGAAACTTCAAAGCAAAAACAAAAGGGTAA
A
GAGAACCCAGATATGGCTAATCCGTCTGCAATGAGTACAACTGCTAAAGGTTCTAAGTCACTAAAAGTT
GAG
CTCATAGAAGATAAAATAGATTATACAAAGGAAAGGCAACCATCCATAGACCTGACATGTGTATCAT
AT
CCATTTGATGAATTCAGTAATCCATATCGTTACAAGTTGGATTTTAGTCTACAGCCTGAAACAGGACC
A
GGCAATCTCATTGATCCGATACATGAATTCAAAGCCTTCACAAATACAGCAACAGCCACAGAAGAGGAT
GTC
AAGATGAAATTTAGCAATGAGGTTTTCCGATTTGCTTCAGCTTGTATGAATTCACGTACCAATGGCA
CT
ATTCATTTTGGAGTCAAAGACAAACCCCATGGGAAAATTGTTGGCATCAAAGTCACCAATGATACCAA
G
GAAGCCCTCATTAACCATTTCAATCTGATGATAAACAAGTATTTTGAAGACCATCAAGTCCAACAAGCA
AAG
AAGTGCATTCGAGAGCCAAGATTTGTGGAAGTTTTACTGCCAAATAGTACTCTATCTGACAGATTTG
TT
ATTGAAGTGGACATTATTCCACAGTTCTCTGAATGCCAATATGATTATTTCCAGATTAAAATGCAAAA
T
TACAACAACAAAATATGGGAACAAAGTAAAAAATTCTCACTATTTGTGCGAGATGGGACCAGCTCTAAG
GAC
ATTACGAAAAATAAAGTTGATTTCAGAGCATTTAAAGCAGATTTTAAAACACTGGCAGAGTCCAGAA
AA
GCAGCAGAAGAAAAATTCAGAGCAAAAACAAATAAAAAAGAAAGAGAGGGACCAAAGTTGGTTAAATT
A
TTGACAGGAAATCAAGATTTGTTAGATAATTCATACTATGAACAGTACATTCTTGTAACAAATAAATGC
CAC
CCAGATCAAACAAAACACTTAGATTTCCTGAAGGAAATTAAATGGTTTGCTGTATTGGAGTTTGATC
CT
GAGTCTAACATCAATGGAGTGGTCAAAGCTTACAAAGAAAGCCGAGTAGCAAACCTTCACTTTCCAAG
T
GTATATGTAGAACAGAAAACCACACCAAATGAGACGATTTCTACTCTAAATCTTTACCATCAACCCAGC
TGG
ATTTTCTGCAATGGCAGGTTAGACCTTGACAGTGAAAAATATAAACCCTTTGATCCAAGTTCCTGGC
AA
AGAGAAAGAGCTTCTGATGTCAGGAAACTGATTTCATTTCTTACACATGAAGACATAATGCCAAGAGG
G
AAGTTTTTGGTGGTATTTCTATTACTGTCCTCTGTGGATGACCCAAGAGATCCCCTCATTGAGACTTTC
TGT
GCTTTCTACCAGGATCTCAAAGGAATGGAAAATATACTGTGTATTTGTGTGCACCCACACATATTTC
AG
GGATGGAAAGATCTACTTGAAGCAAGATTAATAAAACACCAAGATGAAATTTCAAGCCAATGTATTTC
T
GCTTTAAGCCTTGAAGAGATCAATGGCACTATTCTTAAACTAAAATCTGTGACTCAATCTTCAAAAAGG
CTT
TTGCCATCTATTGGTTTATCGACTGTCCTTCTGAAAAAGGAAGAAGATATCATGACTGCTCTGGAAA
TT
ATCTGTGAAAATGAATGTGAGGGTACACTGTTAGAGAAGGACAAAAATAAATTCCTTGAATTCAAGGC
A
TCAAAAGAGGAAGACTTCTATCGAGGTGGCAAAGTGTCATGGTGGAACTTCTACTTCTCTTCTGAAAGT
TAT
TCTTCACCTTTTGTCAAAAGGGATAAATATGAAAGACTTGAAGCAATGATTCAAAACTGTGCAGATT
CT
TCTAAACCAACAAGTACCAAAATTATTCATCTGTATCATCATCCAGGCTGTGGGGGAACTACCTTGGC
T
ATGCACATTCTCTGGGAACTAAGGAAGAAATTCAGATGTGCTGTGCTGAAAAACAAGACAGTGGATTTT
TCT
GAAATTGGAGAACAGGTAACCAGTTTAATCACCTATGGGGCAATGAACCGTCAGGAATACGTACCTG
TA
CTACTCCTTGTTGATGATTTTGAAGAACAAGATAATGTCTATCTTCTGCAGTACTCTATTCAAACAGC
T
ATAGCTAAAAAGTACATTCGATATGAAAAACCTCTGGTGATTATCCTAAATTGTATGAGATCACAAAAT
CCT
GAAAAAAGTGCAAGGATCCCAGACAGTATTGCCGTAATACAGCAACTCTCTCCCAAAGAACAGAGAG
CT
TTTGAGCTTAAATTGAAAGAAATCAAAGAACAGCATAAAAACTTTGAGGATTTTTATTCCTTTATGAT
C
ATGAAAACCAATTTTAATAAAGAATACATAGAAAATGTGGTCCGGAATATCCTGAAAGGGCAGAATATT
TTC
ACCAAGGAAGCAAAGCTCTTTTCTTTTCTGGCTCTTCTTAATTCATATGTGCCTGATACCACCATTT
CA
CTATCACAGTGTGAAAAATTCTTAGGAATTGGAAACAAGAAGGCTTTCTGGGGGACAGAAAAATTTGA
A
GACAAGATGGGCACCTACTCTACAATTCTGATAAAAACAGAGGTCATCGAATGTGGGAACTACTGTGGA
GTA
CGCATCATTCACTCTTTGATTGCAGAGTTCTCACTGGAAGAATTGAAGAAAAGCTATCACCTGAATA
AA
AGTCAAATTATGTTGGATATGCTAACTGAGAATTTGTTCTTCGATACTGGTATGGGAAAAAGTAAATT
T
TTGCAAGATATGCACACACTCCTACTCACAAGACACCGCGATGAACATGAAGGTGAAACAGGAAATTGG
TTT
TCCCCATTTATTGAAGCATTACATAAAGATGAAGGAAATGAAGCAGTTGAAGCTGTATTGCTTGAAA
GT
ATCCATCGGTTCAACCCAAATGCATTCATTTGCCAAGCGTTGGCAAGACATTTCTACATTAAAAAGAA
G
GACTTTGGCAATGCTCTAAACTGGGCAAAACAAGCAAAAATCATAGAACCTGACAATTCTTATATCTCA
GAT
ACACTGGGTCAAGTCTACAAAAGTAAAATAAGATGGTGGATAGAGGAAAACGGAGGAAACGGGAACA
TT
TCAGTTGATGATCTAATTGCTCTTTTGGATTTAGCAGAACATGCCTCAAGTGCATTCAAAGAATCTCA
A
CAGCAAAGTGAAGATAGAGAGTATGAAGTGAAGGAAAGATTGTATCCGAAGTCAAAAAGGCGGTATGAT
ACT
TACAATATAGCTGGTTATCAAGGAGAGATAGAAGTTGGGCTTTACACAATCCAAATTCTCCAGCTCA
TT
CCTTTTTTTGATAATAAAAATGAGCTATCTAAAAGATATATGGTCAATTTTGTATCAGGAAGTAGTGA
T
ATTCCAGGGGATCCAAACAATGAATATAAATTAGCCCTCAAAAACTATATTCCTTATTTAACTAAATTG
AAA
TTTTCTTTGAAAAAGTCCTTTGATTTTTTTGATGAATACTTTGTCCTGCTAAAACCCAGGAACAATA
TT
AAGCAAAATGAAGAGGCCAAAACTCGGAGAAAGGTGGCTGGATATTTTAAGAAATATGTAGATATATT
T
TGTCTCTTAGAAGAATCACAAAACAACACAGGTCTTGGATCAAAGTTCAGTGAGCCACTTCAAGTAGAG
AGA
TGCAGGAGAAACCTAGTAGCTTTAAAAGCAGACAAGTTTTCTGGGCTCTTGGAATATCTTATCAAAA
GT
CAAGAGGATGCTATAAGCACTATGAAATGTATAGTGAACGAATATACTTTTCTCTTAGAACAATGCAC
T
GTCAAAATCCAGTCAAAAGAAAAGCTAAATTTCATCTTGGCCAACATTATTCTCTCCTGTATCCAACCT
ACC
TCCAGATTAGTAAAGCCAGTTGAAAAACTAAAAGATCAGCTTCGAGAAGTCTTGCAACCAATAGGAC
TG
ACTTATCAGTTTTCAGAACCGTATTTTCTAGCTTCCCTCTTATTCTGGCCAGAAAATCAACAACTAGA
T
CAACATTCTGAACAAATGAAAGAGTATGCTCAAGCACTAAAAAATTCTTTCAAGGGGCAATATAAACAT
ATG
CATCGTACAAAGCAACCAATTGCATATTTCTTTCTTGGAAAAGGTAAAAGACTGGAAAGACTTGTTC
AC
AAAGGAAAAATTGACCAGTGCTTTAAGAAGACACCAGATATTAATTCCTTGTGGCAGAGTGGAGATGT
G
TGGAAGGAGGAAAAAGTCCAAGAACTTTTGCTTCGTTTACAAGGTCGAGCTGAAAACAATTGTTTATAT
ATA
GAATATGGAATCAATGAAAAAATCACAATACCCATCACTCCCGCTTTTTTAGGTCAACTTAGAAGTG
GC
AGAAGCATAGAGAAGGTGTCTTTTTACCTGGGATTTTCCATTGGAGGCCCACTTGCTTATGACATTGA
A
ATTGTTTAA


Translation (1589 aa):
MAKQLNLPENTDDWTKEDVNQWLESHKIDQKHREILTEQDVNGAVLKWLKKEHLVDMGITHGPAIQIEEL
F
KELRKTAIEDSIQTSKMGKPSKNAPKDQTVSQKERRETSKQKQKGKENPDMANPSAMSTTAKGSKSLKV
E
LIEDKIDYTKERQPSIDLTCVSYPFDEFSNPYRYKLDFSLQPETGPGNLIDPIHEFKAFTNTATATEED
V
KMKFSNEVFRFASACMNSRTNGTIHFGVKDKPHGKIVGIKVTNDTKEALINHFNLMINKYFEDHQVQQA
K
KCIREPRFVEVLLPNSTLSDRFVIEVDIIPQFSECQYDYFQIKMQNYNNKIWEQSKKFSLFVRDGTSSK
D
ITKNKVDFRAFKADFKTLAESRKAAEEKFRAKTNKKEREGPKLVKLLTGNQDLLDNSYYEQYILVTNKC
H
PDQTKHLDFLKEIKWFAVLEFDPESNINGVVKAYKESRVANLHFPSVYVEQKTTPNETISTLNLYHQPS
W
IFCNGRLDLDSEKYKPFDPSSWQRERASDVRKLISFLTHEDIMPRGKFLVVFLLLSSVDDPRDPLIETF
C
AFYQDLKGMENILCICVHPHIFQGWKDLLEARLIKHQDEISSQCISALSLEEINGTILKLKSVTQSSKR
L
LPSIGLSTVLLKKEEDIMTALEIICENECEGTLLEKDKNKFLEFKASKEEDFYRGGKVSWWNFYFSSES
Y
SSPFVKRDKYERLEAMIQNCADSSKPTSTKIIHLYHHPGCGGTTLAMHILWELRKKFRCAVLKNKTVDF
S
EIGEQVTSLITYGAMNRQEYVPVLLLVDDFEEQDNVYLLQYSIQTAIAKKYIRYEKPLVIILNCMRSQN
P
EKSARIPDSIAVIQQLSPKEQRAFELKLKEIKEQHKNFEDFYSFMIMKTNFNKEYIENVVRNILKGQNI
F
TKEAKLFSFLALLNSYVPDTTISLSQCEKFLGIGNKKAFWGTEKFEDKMGTYSTILIKTEVIECGNYCG
V
RIIHSLIAEFSLEELKKSYHLNKSQIMLDMLTENLFFDTGMGKSKFLQDMHTLLLTRHRDEHEGETGNW
F
SPFIEALHKDEGNEAVEAVLLESIHRFNPNAFICQALARHFYIKKKDFGNALNWAKQAKIIEPDNSYIS
D
TLGQVYKSKIRWWIEENGGNGNISVDDLIALLDLAEHASSAFKESQQQSEDREYEVKERLYPKSKRRYD
T
YNIAGYQGEIEVGLYTIQILQLIPFFDNKNELSKRYMVNFVSGSSDIPGDPNNEYKLALKNYIPYLTKL
K
FSLKKSFDFFDEYFVLLKPRNNIKQNEEAKTRRKVAGYFKKYVDIFCLLEESQNNTGLGSKFSEPLQVE
R
CRRNLVALKADKFSGLLEYLIKSQEDAISTMKCIVNEYTFLLEQCTVKIQSKEKLNFILANIILSCIQP
T
SRLVKPVEKLKDQLREVLQPIGLTYQFSEPYFLASLLFWPENQQLDQHSEQMKEYAQALKNSFKGQYKH
M
HRTKQPIAYFFLGKGKRLERLVHKGKIDQCFKKTPDINSLWQSGDVWKEEKVQELLLRLQGRAENNCLY
I
EYGINEKITIPITPAFLGQLRSGRSIEKVSFYLGFSIGGPLAYDIEIV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser