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Report for CCDS34680.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
34680.1 |
Public |
Homo sapiens |
7 |
SAMD9 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:54809](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:34680.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 34680.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000379958.3 |
ENSP00000369292.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000379958.3](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000369292.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000379958](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000369292](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000620985.4 |
ENSP00000484636.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000620985.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000484636.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000620985](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000484636](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001193307.2 |
NP_001180236.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001193307.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001180236.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001193307](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001180236](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001180236.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_017654.4 |
NP_060124.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_017654.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_060124.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_017654](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_060124](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_060124.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 34680.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4770 nt): ATGGCAAAGCAACTTAACCTTCCAGAAAATACAGATGATTGGACAAAAGAGGATGTAAATCAGTGGTTAG AAAGTCATAAGATTGACCAAAAACACAGGGAAATTTTGACTGAACAAGACGTGAATGGAGCAGTCTTGAA GTGGTTAAAAAAAGAACATCTTGTTGATATGGGCATCACACATGGACCAGCTATTCAAATAGAAGAACTA TTCAAAGAATTGCGGAAAACAGCCATTGAAGATTCGATTCAGACATCTAAGATGGGAAAGCCCAGTAAAA ATGCTCCTAAAGACCAAACTGTGTCTCAAAAGGAACGTAGAGAAACTTCAAAGCAAAAACAAAAGGGTAA AGAGAACCCAGATATGGCTAATCCGTCTGCAATGAGTACAACTGCTAAAGGTTCTAAGTCACTAAAAGTT GAGCTCATAGAAGATAAAATAGATTATACAAAGGAAAGGCAACCATCCATAGACCTGACATGTGTATCAT ATCCATTTGATGAATTCAGTAATCCATATCGTTACAAGTTGGATTTTAGTCTACAGCCTGAAACAGGACC AGGCAATCTCATTGATCCGATACATGAATTCAAAGCCTTCACAAATACAGCAACAGCCACAGAAGAGGAT GTCAAGATGAAATTTAGCAATGAGGTTTTCCGATTTGCTTCAGCTTGTATGAATTCACGTACCAATGGCA CTATTCATTTTGGAGTCAAAGACAAACCCCATGGGAAAATTGTTGGCATCAAAGTCACCAATGATACCAA GGAAGCCCTCATTAACCATTTCAATCTGATGATAAACAAGTATTTTGAAGACCATCAAGTCCAACAAGCA AAGAAGTGCATTCGAGAGCCAAGATTTGTGGAAGTTTTACTGCCAAATAGTACTCTATCTGACAGATTTG TTATTGAAGTGGACATTATTCCACAGTTCTCTGAATGCCAATATGATTATTTCCAGATTAAAATGCAAAA TTACAACAACAAAATATGGGAACAAAGTAAAAAATTCTCACTATTTGTGCGAGATGGGACCAGCTCTAAG GACATTACGAAAAATAAAGTTGATTTCAGAGCATTTAAAGCAGATTTTAAAACACTGGCAGAGTCCAGAA AAGCAGCAGAAGAAAAATTCAGAGCAAAAACAAATAAAAAAGAAAGAGAGGGACCAAAGTTGGTTAAATT ATTGACAGGAAATCAAGATTTGTTAGATAATTCATACTATGAACAGTACATTCTTGTAACAAATAAATGC CACCCAGATCAAACAAAACACTTAGATTTCCTGAAGGAAATTAAATGGTTTGCTGTATTGGAGTTTGATC CTGAGTCTAACATCAATGGAGTGGTCAAAGCTTACAAAGAAAGCCGAGTAGCAAACCTTCACTTTCCAAG TGTATATGTAGAACAGAAAACCACACCAAATGAGACGATTTCTACTCTAAATCTTTACCATCAACCCAGC TGGATTTTCTGCAATGGCAGGTTAGACCTTGACAGTGAAAAATATAAACCCTTTGATCCAAGTTCCTGGC AAAGAGAAAGAGCTTCTGATGTCAGGAAACTGATTTCATTTCTTACACATGAAGACATAATGCCAAGAGG GAAGTTTTTGGTGGTATTTCTATTACTGTCCTCTGTGGATGACCCAAGAGATCCCCTCATTGAGACTTTC TGTGCTTTCTACCAGGATCTCAAAGGAATGGAAAATATACTGTGTATTTGTGTGCACCCACACATATTTC AGGGATGGAAAGATCTACTTGAAGCAAGATTAATAAAACACCAAGATGAAATTTCAAGCCAATGTATTTC TGCTTTAAGCCTTGAAGAGATCAATGGCACTATTCTTAAACTAAAATCTGTGACTCAATCTTCAAAAAGG CTTTTGCCATCTATTGGTTTATCGACTGTCCTTCTGAAAAAGGAAGAAGATATCATGACTGCTCTGGAAA TTATCTGTGAAAATGAATGTGAGGGTACACTGTTAGAGAAGGACAAAAATAAATTCCTTGAATTCAAGGC ATCAAAAGAGGAAGACTTCTATCGAGGTGGCAAAGTGTCATGGTGGAACTTCTACTTCTCTTCTGAAAGT TATTCTTCACCTTTTGTCAAAAGGGATAAATATGAAAGACTTGAAGCAATGATTCAAAACTGTGCAGATT CTTCTAAACCAACAAGTACCAAAATTATTCATCTGTATCATCATCCAGGCTGTGGGGGAACTACCTTGGC TATGCACATTCTCTGGGAACTAAGGAAGAAATTCAGATGTGCTGTGCTGAAAAACAAGACAGTGGATTTT TCTGAAATTGGAGAACAGGTAACCAGTTTAATCACCTATGGGGCAATGAACCGTCAGGAATACGTACCTG TACTACTCCTTGTTGATGATTTTGAAGAACAAGATAATGTCTATCTTCTGCAGTACTCTATTCAAACAGC TATAGCTAAAAAGTACATTCGATATGAAAAACCTCTGGTGATTATCCTAAATTGTATGAGATCACAAAAT CCTGAAAAAAGTGCAAGGATCCCAGACAGTATTGCCGTAATACAGCAACTCTCTCCCAAAGAACAGAGAG CTTTTGAGCTTAAATTGAAAGAAATCAAAGAACAGCATAAAAACTTTGAGGATTTTTATTCCTTTATGAT CATGAAAACCAATTTTAATAAAGAATACATAGAAAATGTGGTCCGGAATATCCTGAAAGGGCAGAATATT TTCACCAAGGAAGCAAAGCTCTTTTCTTTTCTGGCTCTTCTTAATTCATATGTGCCTGATACCACCATTT CACTATCACAGTGTGAAAAATTCTTAGGAATTGGAAACAAGAAGGCTTTCTGGGGGACAGAAAAATTTGA AGACAAGATGGGCACCTACTCTACAATTCTGATAAAAACAGAGGTCATCGAATGTGGGAACTACTGTGGA GTACGCATCATTCACTCTTTGATTGCAGAGTTCTCACTGGAAGAATTGAAGAAAAGCTATCACCTGAATA AAAGTCAAATTATGTTGGATATGCTAACTGAGAATTTGTTCTTCGATACTGGTATGGGAAAAAGTAAATT TTTGCAAGATATGCACACACTCCTACTCACAAGACACCGCGATGAACATGAAGGTGAAACAGGAAATTGG TTTTCCCCATTTATTGAAGCATTACATAAAGATGAAGGAAATGAAGCAGTTGAAGCTGTATTGCTTGAAA GTATCCATCGGTTCAACCCAAATGCATTCATTTGCCAAGCGTTGGCAAGACATTTCTACATTAAAAAGAA GGACTTTGGCAATGCTCTAAACTGGGCAAAACAAGCAAAAATCATAGAACCTGACAATTCTTATATCTCA GATACACTGGGTCAAGTCTACAAAAGTAAAATAAGATGGTGGATAGAGGAAAACGGAGGAAACGGGAACA TTTCAGTTGATGATCTAATTGCTCTTTTGGATTTAGCAGAACATGCCTCAAGTGCATTCAAAGAATCTCA ACAGCAAAGTGAAGATAGAGAGTATGAAGTGAAGGAAAGATTGTATCCGAAGTCAAAAAGGCGGTATGAT ACTTACAATATAGCTGGTTATCAAGGAGAGATAGAAGTTGGGCTTTACACAATCCAAATTCTCCAGCTCA TTCCTTTTTTTGATAATAAAAATGAGCTATCTAAAAGATATATGGTCAATTTTGTATCAGGAAGTAGTGA TATTCCAGGGGATCCAAACAATGAATATAAATTAGCCCTCAAAAACTATATTCCTTATTTAACTAAATTG AAATTTTCTTTGAAAAAGTCCTTTGATTTTTTTGATGAATACTTTGTCCTGCTAAAACCCAGGAACAATA TTAAGCAAAATGAAGAGGCCAAAACTCGGAGAAAGGTGGCTGGATATTTTAAGAAATATGTAGATATATT TTGTCTCTTAGAAGAATCACAAAACAACACAGGTCTTGGATCAAAGTTCAGTGAGCCACTTCAAGTAGAG AGATGCAGGAGAAACCTAGTAGCTTTAAAAGCAGACAAGTTTTCTGGGCTCTTGGAATATCTTATCAAAA GTCAAGAGGATGCTATAAGCACTATGAAATGTATAGTGAACGAATATACTTTTCTCTTAGAACAATGCAC TGTCAAAATCCAGTCAAAAGAAAAGCTAAATTTCATCTTGGCCAACATTATTCTCTCCTGTATCCAACCT ACCTCCAGATTAGTAAAGCCAGTTGAAAAACTAAAAGATCAGCTTCGAGAAGTCTTGCAACCAATAGGAC TGACTTATCAGTTTTCAGAACCGTATTTTCTAGCTTCCCTCTTATTCTGGCCAGAAAATCAACAACTAGA TCAACATTCTGAACAAATGAAAGAGTATGCTCAAGCACTAAAAAATTCTTTCAAGGGGCAATATAAACAT ATGCATCGTACAAAGCAACCAATTGCATATTTCTTTCTTGGAAAAGGTAAAAGACTGGAAAGACTTGTTC ACAAAGGAAAAATTGACCAGTGCTTTAAGAAGACACCAGATATTAATTCCTTGTGGCAGAGTGGAGATGT GTGGAAGGAGGAAAAAGTCCAAGAACTTTTGCTTCGTTTACAAGGTCGAGCTGAAAACAATTGTTTATAT ATAGAATATGGAATCAATGAAAAAATCACAATACCCATCACTCCCGCTTTTTTAGGTCAACTTAGAAGTG GCAGAAGCATAGAGAAGGTGTCTTTTTACCTGGGATTTTCCATTGGAGGCCCACTTGCTTATGACATTGA AATTGTTTAA
Translation (1589 aa): MAKQLNLPENTDDWTKEDVNQWLESHKIDQKHREILTEQDVNGAVLKWLKKEHLVDMGITHGPAIQIEEL FKELRKTAIEDSIQTSKMGKPSKNAPKDQTVSQKERRETSKQKQKGKENPDMANPSAMSTTAKGSKSLKV ELIEDKIDYTKERQPSIDLTCVSYPFDEFSNPYRYKLDFSLQPETGPGNLIDPIHEFKAFTNTATATEED VKMKFSNEVFRFASACMNSRTNGTIHFGVKDKPHGKIVGIKVTNDTKEALINHFNLMINKYFEDHQVQQA KKCIREPRFVEVLLPNSTLSDRFVIEVDIIPQFSECQYDYFQIKMQNYNNKIWEQSKKFSLFVRDGTSSK DITKNKVDFRAFKADFKTLAESRKAAEEKFRAKTNKKEREGPKLVKLLTGNQDLLDNSYYEQYILVTNKC HPDQTKHLDFLKEIKWFAVLEFDPESNINGVVKAYKESRVANLHFPSVYVEQKTTPNETISTLNLYHQPS WIFCNGRLDLDSEKYKPFDPSSWQRERASDVRKLISFLTHEDIMPRGKFLVVFLLLSSVDDPRDPLIETF CAFYQDLKGMENILCICVHPHIFQGWKDLLEARLIKHQDEISSQCISALSLEEINGTILKLKSVTQSSKR LLPSIGLSTVLLKKEEDIMTALEIICENECEGTLLEKDKNKFLEFKASKEEDFYRGGKVSWWNFYFSSES YSSPFVKRDKYERLEAMIQNCADSSKPTSTKIIHLYHHPGCGGTTLAMHILWELRKKFRCAVLKNKTVDF SEIGEQVTSLITYGAMNRQEYVPVLLLVDDFEEQDNVYLLQYSIQTAIAKKYIRYEKPLVIILNCMRSQN PEKSARIPDSIAVIQQLSPKEQRAFELKLKEIKEQHKNFEDFYSFMIMKTNFNKEYIENVVRNILKGQNI FTKEAKLFSFLALLNSYVPDTTISLSQCEKFLGIGNKKAFWGTEKFEDKMGTYSTILIKTEVIECGNYCG VRIIHSLIAEFSLEELKKSYHLNKSQIMLDMLTENLFFDTGMGKSKFLQDMHTLLLTRHRDEHEGETGNW FSPFIEALHKDEGNEAVEAVLLESIHRFNPNAFICQALARHFYIKKKDFGNALNWAKQAKIIEPDNSYIS DTLGQVYKSKIRWWIEENGGNGNISVDDLIALLDLAEHASSAFKESQQQSEDREYEVKERLYPKSKRRYD TYNIAGYQGEIEVGLYTIQILQLIPFFDNKNELSKRYMVNFVSGSSDIPGDPNNEYKLALKNYIPYLTKL KFSLKKSFDFFDEYFVLLKPRNNIKQNEEAKTRRKVAGYFKKYVDIFCLLEESQNNTGLGSKFSEPLQVE RCRRNLVALKADKFSGLLEYLIKSQEDAISTMKCIVNEYTFLLEQCTVKIQSKEKLNFILANIILSCIQP TSRLVKPVEKLKDQLREVLQPIGLTYQFSEPYFLASLLFWPENQQLDQHSEQMKEYAQALKNSFKGQYKH MHRTKQPIAYFFLGKGKRLERLVHKGKIDQCFKKTPDINSLWQSGDVWKEEKVQELLLRLQGRAENNCLY IEYGINEKITIPITPAFLGQLRSGRSIEKVSFYLGFSIGGPLAYDIEIV
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