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Report for CCDS3801.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3801.1 Public Homo sapiens 4 PPID 24 110 108 CCDS HistoryNCBI Gene:5481Re-query CCDS DB by CCDS ID:3801.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3801.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307720.4 ENSP00000303754.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307720.4Link to Ensembl Protein Viewer:ENSP00000303754.3Re-query CCDS DB by Nucleotide ID:ENST00000307720Re-query CCDS DB by Protein ID:ENSP00000303754
Original member Current member NCBI NM_005038.3 NP_005029.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005038.3Link to Protein Sequence:NP_005029.1Re-query CCDS DB by Nucleotide ID:NM_005038Re-query CCDS DB by Protein ID:NP_005029Link to BLAST:NP_005029.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005029.1 370 Q08752 370 100% 0 0

Chromosomal Locations for CCDS 3801.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 158709736 158709824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158710628 158710670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158710762 158710848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158713119 158713260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158715297 158715403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158715562 158715684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158717012 158717200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158719180 158719286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158721343 158721483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158723204 158723288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGTCGCACCCGTCCCCCCAAGCCAAGCCCTCCAACCCCAGTAACCCTCGAGTCTTCTTTGACGTGGACA
TCGGAGGGGAGCGAGTTGGTCGAATTGTCTTAGAATTGTTTGCAGATATCGTACCCAAAACTGCGGAAAA
TTTTCGTGCACTGTGTACAGGAGAAAAAGGCATTGGACACACGACTGGGAAACCTCTCCATTTCAAAGGA
TGCCCTTTTCATCGAATTATTAAGAAATTTATGATTCAGGGTGGAGACTTCTCAAATCAGAATGGGACAG
GTGGAGAAAGTATTTATGGTGAAAAATTTGAAGATGAAAATTTCCATTACAAGCATGATCGGGAGGGTTT
ACTGAGCATGGCAAATGCAGGCCGCAACACAAACGGTTCTCAGTTTTTTATCACAACAGTTCCAACTCCT
CATTTGGATGGGAAACATGTGGTGTTTGGCCAAGTAATTAAAGGAATAGGAGTGGCAAGGATATTGGAAA
ATGTGGAAGTGAAAGGTGAAAAACCTGCTAAATTGTGCGTTATTGCAGAATGTGGAGAATTGAAGGAAGG
AGATGACGGGGGAATATTCCCAAAAGATGGCTCTGGCGACAGTCATCCAGATTTCCCTGAGGATGCGGAT
ATAGATTTAAAAGATGTAGATAAAATTTTATTAATAACAGAAGACTTAAAAAACATTGGAAATACTTTTT
TCAAATCCCAGAACTGGGAGATGGCTATTAAAAAATATGCAGAAGTTTTAAGATACGTGGACAGTTCAAA
GGCTGTTATTGAGACAGCAGATAGAGCCAAGCTGCAACCTATAGCTTTAAGCTGTGTACTGAATATTGGT
GCTTGTAAACTGAAGATGTCAAATTGGCAGGGAGCAATTGACAGTTGTTTAGAGGCTCTTGAACTAGACC
CATCAAATACCAAAGCATTGTACCGCAGAGCTCAAGGATGGCAAGGATTAAAAGAATATGATCAAGCATT
GGCTGATCTTAAGAAAGCTCAGGGGATAGCACCAGAAGATAAAGCTATCCAGGCAGAATTGCTGAAAGTC
AAACAAAAGATAAAGGCACAGAAAGATAAAGAGAAGGCAGTATATGCAAAAATGTTTGCTTAG

Translation (370 aa):
MSHPSPQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKG
CPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTP
HLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGELKEGDDGGIFPKDGSGDSHPDFPEDAD
IDLKDVDKILLITEDLKNIGNTFFKSQNWEMAIKKYAEVLRYVDSSKAVIETADRAKLQPIALSCVLNIG
ACKLKMSNWQGAIDSCLEALELDPSNTKALYRRAQGWQGLKEYDQALADLKKAQGIAPEDKAIQAELLKV
KQKIKAQKDKEKAVYAKMFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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