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Report for CCDS42506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42506.1 Public Homo sapiens 19 BEST2 24 110 108 CCDS HistoryNCBI Gene:54831Re-query CCDS DB by CCDS ID:42506.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42506.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000042931.1 ENSP00000042931.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000042931.1Link to Ensembl Protein Viewer:ENSP00000042931.1Re-query CCDS DB by Nucleotide ID:ENST00000042931Re-query CCDS DB by Protein ID:ENSP00000042931
Original member Current member EBI ENST00000553030.6 ENSP00000447203.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000553030.6Link to Ensembl Protein Viewer:ENSP00000447203.1Re-query CCDS DB by Nucleotide ID:ENST00000553030Re-query CCDS DB by Protein ID:ENSP00000447203
Original member Current member EBI ENST00000549706.5 ENSP00000448310.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000549706.5Link to Ensembl Protein Viewer:ENSP00000448310.1Re-query CCDS DB by Nucleotide ID:ENST00000549706Re-query CCDS DB by Protein ID:ENSP00000448310
Original member Current member NCBI NM_017682.3 NP_060152.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017682.3Link to Protein Sequence:NP_060152.2Re-query CCDS DB by Nucleotide ID:NM_017682Re-query CCDS DB by Protein ID:NP_060152Link to BLAST:NP_060152.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060152.2 509 Q8NFU1 509 100% 0 0

Chromosomal Locations for CCDS 42506.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12752593 12752744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12753260 12753354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12754552 12754785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12754877 12755031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12755379 12755456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12755615 12755767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12755855 12755935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12756141 12756295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12757651 12758077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGACCGTCACCTACACAGCCCGAGTGGCGAACGCCCGCTTCGGTGGCTTCTCCCAGCTGCTGCTACTGT
GGCGTGGGAGCATCTACAAACTCCTGTGGCGAGAGCTGCTCTGCTTCCTTGGGTTCTACATGGCGCTGAG
TGCTGCCTACCGCTTTGTGCTGACCGAAGGGCAGAAGCGCTACTTCGAGAAGCTTGTGATTTATTGTGAC
CAGTATGCCAGCCTCATCCCTGTCTCCTTCGTGCTTGGCTTTTATGTGACGCTGGTGGTGAACCGCTGGT
GGAGCCAGTACCTATGCATGCCGCTGCCCGACGCGCTCATGTGCGTGGTGGCGGGCACCGTGCACGGACG
CGACGACCGCGGCCGCCTCTACCGGCGCACACTCATGCGCTACGCAGGGCTCTCGGCCGTGCTCATCCTG
CGCTCCGTCAGCACCGCGGTGTTCAAGCGCTTCCCCACCATAGACCACGTGGTGGAGGCTGGGTTTATGA
CCCGCGAGGAGCGCAAGAAGTTTGAAAACCTGAACTCATCCTACAACAAGTACTGGGTGCCCTGCGTCTG
GTTCTCCAACCTGGCGGCACAGGCCCGACGCGAGGGCCGCATCCGCGACAACAGCGCCCTTAAGCTGCTG
CTCGAGGAGCTGAATGTTTTTCGGGGCAAATGTGGAATGCTCTTTCACTATGACTGGATTAGCGTACCCC
TCGTGTACACGCAGGTGGTGACCATCGCACTGTACAGCTACTTCCTGGCTTGCCTCATTGGTCGCCAGTT
CCTGGACCCGGCTCAGGGTTACAAAGACCACGACCTAGACCTGTGTGTGCCCATCTTCACCCTCTTGCAG
TTCTTCTTCTACGCCGGCTGGCTCAAGGTAGCTGAGCAGCTCATCAACCCCTTCGGAGAGGACGATGATG
ACTTTGAGACCAACTTTCTGATCGATAGAAACTTCCAGGTGTCCATGCTGGCAGTGGACGAGATGTATGA
TGACCTGGCTGTGCTGGAGAAGGACTTGTACTGGGATGCAGCCGAGGCTCGCGCCCCATACACAGCGGCT
ACTGTCTTCCAGCTGCGGCAGCCTTCCTTCCAGGGCTCCACCTTTGACATCACGCTGGCCAAAGAAGACA
TGCAGTTCCAGCGGCTGGACGGCTTGGATGGACCGATGGGAGAGGCGCCCGGCGACTTCCTGCAGCGCCT
CCTGCCGGCGGGCGCGGGCATGGTCGCGGGAGGCCCGCTGGGCCGGCGCCTGTCCTTTCTACTCCGCAAG
AACAGCTGCGTGTCGGAGGCGTCTACTGGGGCCAGCTGCTCATGCGCGGTTGTCCCCGAAGGCGCGGCCC
CGGAGTGCAGCTGCGGGGACCCGCTGCTCGACCCCGGCCTGCCGGAGCCCGAGGCCCCGCCCCCTGCGGG
TCCCGAACCGCTTACCCTCATCCCTGGGCCTGTCGAGCCCTTCAGCATCGTGACCATGCCCGGGCCCCGG
GGTCCGGCGCCACCCTGGCTGCCCAGCCCTATTGGCGAGGAGGAGGAGAATCTGGCCTGA

Translation (509 aa):
MTVTYTARVANARFGGFSQLLLLWRGSIYKLLWRELLCFLGFYMALSAAYRFVLTEGQKRYFEKLVIYCD
QYASLIPVSFVLGFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHGRDDRGRLYRRTLMRYAGLSAVLIL
RSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNKYWVPCVWFSNLAAQARREGRIRDNSALKLL
LEELNVFRGKCGMLFHYDWISVPLVYTQVVTIALYSYFLACLIGRQFLDPAQGYKDHDLDLCVPIFTLLQ
FFFYAGWLKVAEQLINPFGEDDDDFETNFLIDRNFQVSMLAVDEMYDDLAVLEKDLYWDAAEARAPYTAA
TVFQLRQPSFQGSTFDITLAKEDMQFQRLDGLDGPMGEAPGDFLQRLLPAGAGMVAGGPLGRRLSFLLRK
NSCVSEASTGASCSCAVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPR
GPAPPWLPSPIGEEEENLA


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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