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Report for CCDS68892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
68892.1 Public Homo sapiens 5 PTCD2 24 110 108 CCDS HistoryNCBI Gene:79810Re-query CCDS DB by CCDS ID:68892.1Re-query CCDS DB by GeneID:79810See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 68892.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000536805.5 ENSP00000444772.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536805.5Link to Ensembl Protein Viewer:ENSP00000444772.1Re-query CCDS DB by Nucleotide ID:ENST00000536805Re-query CCDS DB by Protein ID:ENSP00000444772
Original member Current member NCBI NM_001284404.2 NP_001271333.1 Accepted alive Link to Nucleotide Sequence:NM_001284404.2Link to Protein Sequence:NP_001271333.1Re-query CCDS DB by Nucleotide ID:NM_001284404Re-query CCDS DB by Protein ID:NP_001271333Link to BLAST:NP_001271333.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271333.1 216 Q8WV60-2 216 100% 0 0

Chromosomal Locations for CCDS 68892.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 72326711 72326741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72335794 72335885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72338622 72338735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72342962 72343036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72352641 72352754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72358203 72358427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGTGGAACTGGCTAAAAATGTCATTTACAGGTGCTTTGCAAGTATTGATAGAGATGAAAAACCAAGATG
TG
AAGTTCACCAAAGATACCTATGTTCTTGCTTTTGCAATTTGCTACAAACTGAATAGCCCTGAGTCTTT
C
AAAATCTGTACTACATTAAGAGAAGAAGCTCTACTCAAAGGAGAAATTCTCTCCAGGAGAGCATCCTGT
TTC
GCTGTGGCATTAGCTCTGAATCAGAATGAGATGGCAAAAGCTGTGTCCATTTTTTCTCAAATCATGA
AT
CCAGAAAGCATAGCCTGCATTAATTTAAATATTATAATCCATATCCAGTCAAATATGTTGGAAAACCT
G
ATAAAGACTCTAAAAAATGCTGCAGAAGGAAATTTATCAAAATTTGTGAAAAGACATGTGTTCTCGGAG
GAA
GTGCTGGCCAAAGTGAGGGAAAAAGTGAAGGATGTGCCTGCCCTTGTGGCCAAATTTGATGAGATCT
AT
GGGACACTGCACATCACTGGCCAGGTCACCACTGATTCTTTGGATGCTGTGCTCTGCCACACCCCCAG
G
GACAGGAAATCTCACACGTTGCTATTAAACAAGAGGATGGTCAGCCGTCGCACCTTCCAGCCACTCAGC
CAG
TCCCTGTTGGCTGAGTAA


Translation (216 aa):
MWNWLKMSFTGALQVLIEMKNQDVKFTKDTYVLAFAICYKLNSPESFKICTTLREEALLKGEILSRRASC
F
AVALALNQ
NEMAKAVSIFSQIMNPESIACINLNIIIHIQSNMLENLIKTLKNAAEGNLSKFVKRHVFSE
E
V
LAKVREKVKDVPALVAKFDEIYGTLHITGQVTTDSLDAVLCHTPRDRKSHTLLLNKRMVSRRTFQPLS
Q
SLLAE




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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