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Report for CCDS42185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42185.1 Public Homo sapiens 16 CHTF8 24 110 108 CCDS HistoryNCBI Gene:54921Re-query CCDS DB by CCDS ID:42185.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42185.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398235.6 ENSP00000381290.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398235.6Link to Ensembl Protein Viewer:ENSP00000381290.2Re-query CCDS DB by Nucleotide ID:ENST00000398235Re-query CCDS DB by Protein ID:ENSP00000381290
Original member Current member EBI ENST00000448552.7 ENSP00000408367.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000448552.7Link to Ensembl Protein Viewer:ENSP00000408367.3Re-query CCDS DB by Nucleotide ID:ENST00000448552Re-query CCDS DB by Protein ID:ENSP00000408367
Original member Current member NCBI NM_001039690.5 NP_001034779.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039690.5Link to Protein Sequence:NP_001034779.1Re-query CCDS DB by Nucleotide ID:NM_001039690Re-query CCDS DB by Protein ID:NP_001034779Link to BLAST:NP_001034779.1
Original member Current member NCBI NM_001040146.5 NP_001035236.1 Accepted alive Link to Nucleotide Sequence:NM_001040146.5Link to Protein Sequence:NP_001035236.1Re-query CCDS DB by Nucleotide ID:NM_001040146Re-query CCDS DB by Protein ID:NP_001035236Link to BLAST:NP_001035236.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034779.1 121 P0CG13 121 100% 0 0
NP_001035236.1 121 P0CG13 121 100% 0 0

Chromosomal Locations for CCDS 42185.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 69120425 69120649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69121053 69121170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69121436 69121458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (366 nt):
ATGGTGCAAATTGTTATTTCCAGTGCGAGGGCTGGAGGCCTGGCAGAATGGGTGCTGATGGAGCTACAGG
GGGAGATCGAGGCTCGCTACAGCACTGGATTAGCTGGAAACCTCCTGGGAGACCTACATTACACCACTGA
GGGAATCCCTGTGCTGATCGTGGGGCATCATATCCTGTATGGGAAAATCATCCACCTGGAGAAACCTTTT
GCAGTCCTTGTCAAACACACTCCTGGGGATCAGGACTGTGATGAGCTTGGCCGCGAGACTGGCACCCGGT
ACCTGGTGACAGCACTCATCAAAGACAAGATCCTTTTCAAAACCCGCCCCAAGCCCATTATCACCAGCGT
CCCCAAGAAAGTATGA

Translation (121 aa):
MVQIVISSARAGGLAEWVLMELQGEIEARYSTGLAGNLLGDLHYTTEGIPVLIVGHHILYGKIIHLEKPF
AVLVKHTPGDQDCDELGRETGTRYLVTALIKDKILFKTRPKPIITSVPKKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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