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Report for CCDS93148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93148.1 Public Homo sapiens 22 TUG1 24 110 108 CCDS HistoryNCBI Gene:55000Re-query CCDS DB by CCDS ID:93148.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Non-AUG initiation codon
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 93148.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000644773.3 ENSP00000501406.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644773.3Link to Ensembl Protein Viewer:ENSP00000501406.2Re-query CCDS DB by Nucleotide ID:ENST00000644773Re-query CCDS DB by Protein ID:ENSP00000501406
Original member Current member NCBI NM_001396518.1 NP_001383447.1 Accepted alive Link to Nucleotide Sequence:NM_001396518.1Link to Protein Sequence:NP_001383447.1Re-query CCDS DB by Nucleotide ID:NM_001396518Re-query CCDS DB by Protein ID:NP_001383447Link to BLAST:NP_001383447.1
Original member Current member NCBI NM_001398476.1 NP_001385405.1 Accepted alive Link to Nucleotide Sequence:NM_001398476.1Link to Protein Sequence:NP_001385405.1Re-query CCDS DB by Nucleotide ID:NM_001398476Re-query CCDS DB by Protein ID:NP_001385405Link to BLAST:NP_001385405.1
Original member Current member NCBI NM_001398477.1 NP_001385406.1 Accepted alive Link to Nucleotide Sequence:NM_001398477.1Link to Protein Sequence:NP_001385406.1Re-query CCDS DB by Nucleotide ID:NM_001398477Re-query CCDS DB by Protein ID:NP_001385406Link to BLAST:NP_001385406.1
Original member Current member NCBI NM_001398478.1 NP_001385407.1 Accepted alive Link to Nucleotide Sequence:NM_001398478.1Link to Protein Sequence:NP_001385407.1Re-query CCDS DB by Nucleotide ID:NM_001398478Re-query CCDS DB by Protein ID:NP_001385407Link to BLAST:NP_001385407.1
Original member Current member NCBI NM_001398479.1 NP_001385408.1 Accepted alive Link to Nucleotide Sequence:NM_001398479.1Link to Protein Sequence:NP_001385408.1Re-query CCDS DB by Nucleotide ID:NM_001398479Re-query CCDS DB by Protein ID:NP_001385408Link to BLAST:NP_001385408.1
Original member Current member NCBI NM_001398480.1 NP_001385409.1 Accepted alive Link to Nucleotide Sequence:NM_001398480.1Link to Protein Sequence:NP_001385409.1Re-query CCDS DB by Nucleotide ID:NM_001398480Re-query CCDS DB by Protein ID:NP_001385409Link to BLAST:NP_001385409.1

Chromosomal Locations for CCDS 93148.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 30969357 30969818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon CTG) with M at amino acid position 1

Nucleotide Sequence (462 nt):
CTGGCGCGCCCTCCCCCCCTCCCGGGTCTGGTAGGGCGAAGGAACGGGCGTGCGGTCGATCGAGCGATCG
GTTGGCGGCTCTTTCTCCTGCTCTGGCATCCAGCTCTTGGGGCGCAGGCCCGGCCGCCGCGGCGCGCGCC
CGGTGGCCGTTGGCGCTCGCGCCGCGTCTTTCTTCTCGTACGCAGAACTCGGGCGGCGGCCTATGCGTTT
GCGATTCGACGAGGAGTCGTCCGGGTGGTCGGCGGCGGCGGGCAGCTGCTCCGCCCCGCTCCGGGGGAGG
CGGCGGCGGCAGCGGCCGCGGGATTTGGAGCGGCCGGGGAGGCGGGGGTGGCCGGGGCCGGCTTGGAGGC
CTGGCGCCACCCTTCGGGGCCTGCAAGGACCCAGTTGGGGGGGCAGGAGGGGGCCGGAGGATGGTTGGTT
GTGGGATTTCTACTTTGCCTTTTCCTCCTTATGCCGCCTTAG

Translation (153 aa):
MARPPPLPGLVGRRNGRAVDRAIGWRLFLLLWHPALGAQARPPRRAPGGRWRSRRVFLLVRRTRAAAYAF
AIRRGVVRVVGGGGQLLRPAPGEAAAAAAAGFGAAGEAGVAGAGLEAWRHPSGPARTQLGGQEGAGGWLV
VGFLLCLFLLMPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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