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Report for CCDS2221.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2221.2 Public Homo sapiens 2 FIGN 24 110 108 CCDS HistoryNCBI Gene:55137Re-query CCDS DB by CCDS ID:2221.2See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2221.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333129.4 ENSP00000333836.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333129.4Link to Ensembl Protein Viewer:ENSP00000333836.3Re-query CCDS DB by Nucleotide ID:ENST00000333129Re-query CCDS DB by Protein ID:ENSP00000333836
Original member Current member NCBI NM_018086.4 NP_060556.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018086.4Link to Protein Sequence:NP_060556.2Re-query CCDS DB by Nucleotide ID:NM_018086Re-query CCDS DB by Protein ID:NP_060556Link to BLAST:NP_060556.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060556.2 759 Q5HY92 759 100% 0 0

Chromosomal Locations for CCDS 2221.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 163609552 163611806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163734903 163734927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2280 nt):
ATGATCAGTAGCACCAGTGTTTATGGCTTGAAGATGCAGTGGACGCCAGAGCATGCCCAGTGGCCAGAAC
AGCACTTTGACATCACCTCAACCACTCGGTCTCCTGCCCACAAAGTTGAAGCCTACAGAGGTCATCTGCA
GCGCACCTATCAGTACGCCTGGGCGAATGATGACATATCTGCTCTGACTGCATCCAACCTACTAAAAAAA
TATGCAGAGAAGTATTCCGGCATTTTGGAAGGTCCTGTGGACCGACCCGTACTCAGCAACTATTCGGACA
CACCATCAGGACTAGTGAACGGTCGGAAAAATGAAAGTGAACCCTGGCAGCCTTCCTTGAATTCAGAAGC
TGTTTATCCCATGAACTGTGTTCCGGATGTTATCACTGCCAGCAAAGCTGGAGTCAGTTCAGCCCTCCCT
CCAGCAGATGTCTCTGCGAGTATAGGAAGCTCTCCTGGGGTAGCCAGCAACCTGACAGAACCTAGTTATT
CAAGTAGTACCTGTGGAAGCCACACTGTACCCAGTCTTCATGCAGGGCTCCCATCTCAGGAATATGCCCC
AGGATACAACGGATCATATTTGCATTCTACTTATAGTAGCCAGCCAGCACCTGCACTTCCTTCACCTCAT
CCGTCTCCTTTGCATAGCTCTGGGCTACTACAGCCCCCACCACCACCTCCTCCGCCACCAGCCTTGGTCC
CAGGCTACAATGGGACTTCTAACCTCTCCAGTTACAGCTATCCGTCTGCTAGCTATCCTCCTCAGACTGC
TGTGGGGTCTGGGTACAGCCCTGGGGGGGCACCGCCTCCGCCTTCAGCGTACCTGCCTTCAGGAATTCCT
GCTCCCACCCCCCTACCCCCCACCACTGTTCCTGGCTACACCTACCAGGGCCATGGTTTGACACCTATTG
CACCGTCGGCTCTGACAAACAGTTCAGCAAGTTCTCTCAAAAGGAAAGCTTTCTACATGGCAGGGCAAGG
AGATATGGACTCCAGTTATGGAAATTACAGCTATGGCCAACAGAGATCTACACAGAGTCCTATGTACAGA
ATGCCCGACAACAGCATTTCAAACACAAATCGGGGGAATGGCTTTGACAGAAGTGCTGAAACATCATCCT
TAGCATTTAAGCCAACGAAGCAGCTAATGTCCTCTGAACAGCAAAGGAAATTCAGCAGCCAGTCCAGTAG
GGCTCTGACCCCTCCTTCCTACAGTACTGCTAAAAATTCATTGGGATCAAGATCCAGTGAATCCTTTGGG
AAGTACACATCGCCAGTAATGAGTGAGCATGGGGACGAGCACAGGCAGCTCCTCTCTCACCCAATGCAAG
GCCCTGGACTCCGTGCAGCTACCTCATCCAACCACTCTGTGGACGAGCAACTGAAGAATACTGACACGCA
CCTCATCGACCTGGTAACCAATGAGATTATCACCCAAGGACCTCCAGTGGACTGGAATGACATTGCTGGT
CTCGACCTGGTGAAGGCTGTCATTAAAGAGGAGGTTTTATGGCCAGTGTTGAGGTCAGACGCGTTCAGTG
GACTGACGGCCTTACCTCGGAGCATCCTTTTATTTGGACCTCGGGGGACAGGCAAAACATTATTGGGCAG
ATGCATCGCTAGTCAGCTGGGGGCCACATTTTTCAAAATTGCCGGTTCTGGACTAGTCGCCAAGTGGTTA
GGAGAAGCAGAGAAAATTATCCATGCCTCTTTTCTTGTGGCCAGGTGTCGCCAGCCCTCGGTGATTTTTG
TTAGTGACATTGACATGCTTCTCTCCTCTCAAGTGAATGAGGAACATAGTCCAGTCAGTCGGATGAGAAC
CGAATTTCTGATGCAACTGGACACTGTACTAACTTCGGCTGAGGACCAAATCGTAGTAATTTGTGCCACC
AGTAAACCAGAAGAAATAGATGAATCCCTTCGGAGGTACTTCATGAAACGACTTTTAATCCCACTTCCTG
ACAGCACAGCGAGGCACCAGATAATAGTACAACTGCTCTCACAGCACAATTACTGTCTCAATGACAAGGA
GTTTGCACTGCTCGTCCAGCGCACAGAAGGCTTTTCTGGACTAGATGTGGCTCATTTGTGTCAGGAAGCA
GTGGTGGGCCCCCTCCATGCCATGCCAGCCACAGACCTTTCAGCCATTATGCCCAGCCAGTTGAGGCCCG
TTACATATCAAGACTTTGAAAATGCTTTCTGCAAGATTCAGCCTAGCATATCTCAAAAGGAGCTTGATAT
GTATGTTGAATGGAACAAAATGTTTGGTTGCAGTCAGTGA

Translation (759 aa):
MISSTSVYGLKMQWTPEHAQWPEQHFDITSTTRSPAHKVEAYRGHLQRTYQYAWANDDISALTASNLLKK
YAEKYSGILEGPVDRPVLSNYSDTPSGLVNGRKNESEPWQPSLNSEAVYPMNCVPDVITASKAGVSSALP
PADVSASIGSSPGVASNLTEPSYSSSTCGSHTVPSLHAGLPSQEYAPGYNGSYLHSTYSSQPAPALPSPH
PSPLHSSGLLQPPPPPPPPPALVPGYNGTSNLSSYSYPSASYPPQTAVGSGYSPGGAPPPPSAYLPSGIP
APTPLPPTTVPGYTYQGHGLTPIAPSALTNSSASSLKRKAFYMAGQGDMDSSYGNYSYGQQRSTQSPMYR
MPDNSISNTNRGNGFDRSAETSSLAFKPTKQLMSSEQQRKFSSQSSRALTPPSYSTAKNSLGSRSSESFG
KYTSPVMSEHGDEHRQLLSHPMQGPGLRAATSSNHSVDEQLKNTDTHLIDLVTNEIITQGPPVDWNDIAG
LDLVKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWL
GEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICAT
SKPEEIDESLRRYFMKRLLIPLPDSTARHQIIVQLLSQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEA
VVGPLHAMPATDLSAIMPSQLRPVTYQDFENAFCKIQPSISQKELDMYVEWNKMFGCSQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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