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Report for CCDS510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
510.1 Public Homo sapiens 1 RNF220 24 110 108 CCDS HistoryNCBI Gene:55182Re-query CCDS DB by CCDS ID:510.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 510.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355387.6 ENSP00000347548.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355387.6Link to Ensembl Protein Viewer:ENSP00000347548.2Re-query CCDS DB by Nucleotide ID:ENST00000355387Re-query CCDS DB by Protein ID:ENSP00000347548
Original member Current member EBI ENST00000361799.7 ENSP00000354872.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361799.7Link to Ensembl Protein Viewer:ENSP00000354872.2Re-query CCDS DB by Nucleotide ID:ENST00000361799Re-query CCDS DB by Protein ID:ENSP00000354872
Original member Current member NCBI NM_001319956.1 NP_001306885.1 Accepted alive Link to Nucleotide Sequence:NM_001319956.1Link to Protein Sequence:NP_001306885.1Re-query CCDS DB by Nucleotide ID:NM_001319956Re-query CCDS DB by Protein ID:NP_001306885Link to BLAST:NP_001306885.1
Original member Current member NCBI NM_001376488.1 NP_001363417.1 Accepted alive Link to Nucleotide Sequence:NM_001376488.1Link to Protein Sequence:NP_001363417.1Re-query CCDS DB by Nucleotide ID:NM_001376488Re-query CCDS DB by Protein ID:NP_001363417Link to BLAST:NP_001363417.1
Original member Current member NCBI NM_018150.4 NP_060620.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018150.4Link to Protein Sequence:NP_060620.2Re-query CCDS DB by Nucleotide ID:NM_018150Re-query CCDS DB by Protein ID:NP_060620Link to BLAST:NP_060620.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001306885.1 566 Q5VTB9-1 566 100% 0 0
NP_001363417.1 566 Q5VTB9-1 566 100% 0 0
NP_060620.2 566 Q5VTB9-1 566 100% 0 0

Chromosomal Locations for CCDS 510.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 44412098 44412722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44614165 44614297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44622742 44622787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44626297 44626398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44632343 44632385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44635545 44635588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44636030 44636162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44644698 44644794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44644995 44645081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44645221 44645276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44645410 44645488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44649661 44649769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44649883 44649957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44650704 44650775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1701 nt):
ATGGACTTACACCGGGCAGCCTTCAAGATGGAGAACTCATCCTACCTTCCCAACCCTCTGGCATCCCCAG
CACTGATGGTCCTGGCATCCACGGCTGAGGCCAGCCGTGATGCTTCCATCCCTTGTCAGCAGCCACGACC
CTTTGGTGTACCTGTCTCAGTTGACAAGGACGTGCATATTCCTTTCACCAACGGTTCCTATACCTTTGCC
TCTATGTACCATCGGCAAGGTGGGGTGCCAGGCACTTTTGCCAATCGTGATTTCCCCCCTTCTCTACTAC
ACCTCCACCCTCAATTTGCTCCCCCAAATCTAGATTGCACCCCAATCAGTATGCTGAATCATAGTGGTGT
GGGGGCTTTCCGGCCCTTTGCCTCCACCGAGGACCGGGAGAGCTATCAGTCAGCCTTTACGCCGGCCAAG
CGACTTAAGAACTGCCATGACACAGAGTCTCCCCACTTGCGCTTCTCAGATGCAGATGGCAAGGAATATG
ACTTTGGGACACAGCTGCCATCTAGCTCCCCCGGTTCACTAAAGGTTGATGACACTGGGAAGAAGATTTT
TGCTGTCTCTGGCCTCATTTCTGATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGATGTAAG
AAGAAAGCAGCGGCATTGTTCGACAGCCAGGCCCCAATTTGCCCCATCTGCCAGGTCCTGCTGAGGCCCA
GTGAGCTGCAGGAGCATATGGAGCAGGAACTGGAGCAGCTAGCCCAACTGCCCTCGAGCAAGAATTCCCT
TCTGAAGGATGCCATGGCTCCAGGCACCCCAAAGTCCCTCCTGTTGTCTGCTTCCATCAAGAGGGAAGGA
GAGTCTCCAACGGCATCACCCCACTCATCTGCCACCGATGACCTCCACCATTCAGACAGATACCAGACCT
TTCTGCGAGTACGAGCCAACCGGCAGACCCGACTGAATGCTCGGATTGGGAAAATGAAACGGAGGAAGCA
AGATGAAGGGCAGAGGGAAGGCTCCTGCATGGCTGAGGATGATGCTGTGGACATCGAGCATGAGAACAAC
AACCGCTTTGAGGAGTATGAGTGGTGTGGACAGAAGCGGATACGGGCCACCACTCTCCTGGAAGGTGGCT
TCCGAGGCTCTGGCTTCATCATGTGCAGCGGCAAAGAGAACCCGGACAGTGATGCTGACTTGGATGTGGA
TGGGGATGACACTCTGGAGTATGGGAAGCCACAATACACAGAGGCTGATGTCATCCCCTGCACAGGCGAG
GAGCCTGGTGAAGCCAAGGAGAGAGAGGCACTTCGGGGCGCAGTCCTAAATGGCGGCCCTCCCAGCACGC
GCATCACACCTGAGTTCTCTAAATGGGCCAGTGATGAGATGCCATCCACCAGCAATGGTGAAAGCAGCAA
GCAGGAGGCCATGCAGAAGACCTGCAAGAACAGCGACATCGAGAAAATCACCGAAGATTCAGCTGTGACC
ACGTTTGAGGCTCTGAAGGCTCGGGTCAGAGAACTTGAACGGCAGCTATCTCGTGGGGACCGTTACAAAT
GCCTCATCTGCATGGACTCGTACTCGATGCCCCTAACGTCCATCCAGTGTTGGCACGTGCACTGCGAGGA
GTGCTGGCTGCGGACCCTGGGTGCCAAGAAGCTCTGCCCTCAGTGCAACACGATCACAGCGCCCGGAGAC
CTGCGGAGGATCTACTTGTGA

Translation (566 aa):
MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQPRPFGVPVSVDKDVHIPFTNGSYTFA
SMYHRQGGVPGTFANRDFPPSLLHLHPQFAPPNLDCTPISMLNHSGVGAFRPFASTEDRESYQSAFTPAK
RLKNCHDTESPHLRFSDADGKEYDFGTQLPSSSPGSLKVDDTGKKIFAVSGLISDREASSSPEDRNDRCK
KKAAALFDSQAPICPICQVLLRPSELQEHMEQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREG
ESPTASPHSSATDDLHHSDRYQTFLRVRANRQTRLNARIGKMKRRKQDEGQREGSCMAEDDAVDIEHENN
NRFEEYEWCGQKRIRATTLLEGGFRGSGFIMCSGKENPDSDADLDVDGDDTLEYGKPQYTEADVIPCTGE
EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVT
TFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGD
LRRIYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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