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Report for CCDS8965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8965.1 Public Homo sapiens 12 AVPR1A 24 110 108 CCDS HistoryNCBI Gene:552Re-query CCDS DB by CCDS ID:8965.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 8965.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299178.4 ENSP00000299178.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299178.4Link to Ensembl Protein Viewer:ENSP00000299178.3Re-query CCDS DB by Nucleotide ID:ENST00000299178Re-query CCDS DB by Protein ID:ENSP00000299178
Original member Current member NCBI NM_000706.5 NP_000697.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000706.5Link to Protein Sequence:NP_000697.1Re-query CCDS DB by Nucleotide ID:NM_000706Re-query CCDS DB by Protein ID:NP_000697Link to BLAST:NP_000697.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000697.1 418 P37288 418 100% 0 0

Chromosomal Locations for CCDS 8965.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 63147359 63147645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 63149867 63150836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGCGTCTCTCCGCCGGTCCCGACGCGGGGCCCTCGGGCAACTCCAGCCCATGGTGGCCTCTGGCCACCG
GCGCTGGCAACACAAGCCGGGAGGCCGAAGCCCTCGGGGAGGGCAACGGCCCACCGAGGGACGTGCGCAA
CGAGGAGCTGGCCAAACTGGAGATCGCCGTGCTGGCGGTGACTTTCGCGGTGGCCGTGCTGGGCAACAGC
AGCGTACTGCTGGCTCTGCACCGGACGCCGCGCAAGACGTCCCGCATGCACCTCTTCATCCGACACCTCA
GCCTGGCCGACCTGGCCGTGGCATTCTTCCAGGTGCTGCCGCAAATGTGCTGGGACATCACCTACCGCTT
CCGCGGCCCCGACTGGCTGTGCCGCGTGGTGAAGCACCTGCAGGTGTTCGGCATGTTTGCGTCGGCCTAC
ATGCTGGTAGTCATGACAGCCGACCGCTACATCGCGGTGTGCCACCCGCTCAAGACTCTGCAACAGCCCG
CGCGCCGCTCGCGCCTCATGATCGCGGCCGCCTGGGTGCTGAGCTTCGTGCTGAGCACGCCGCAGTACTT
CGTCTTCTCCATGATCGAGGTGAACAATGTCACCAAGGCCCGCGACTGCTGGGCCACCTTCATCCAGCCC
TGGGGTTCTCGTGCCTACGTGACCTGGATGACGGGCGGCATCTTTGTGGCGCCCGTGGTCATCTTGGGTA
CCTGCTACGGCTTCATCTGCTACAACATCTGGTGCAACGTCCGCGGGAAGACGGCGTCGCGCCAGAGCAA
GGGTGCAGAGCAAGCGGGTGTGGCCTTCCAAAAGGGGTTCCTGCTCGCACCCTGTGTCAGCAGCGTGAAG
TCCATTTCCCGGGCCAAGATCCGCACGGTGAAGATGACTTTTGTGATCGTGACGGCTTACATCGTCTGCT
GGGCGCCTTTCTTCATCATCCAGATGTGGTCTGTCTGGGATCCCATGTCCGTCTGGACCGAATCGGAAAA
CCCTACCATCACCATCACTGCATTACTGGGTTCCTTGAATAGCTGCTGTAATCCCTGGATATACATGTTT
TTTAGTGGCCATCTCCTTCAAGACTGTGTTCAAAGCTTCCCATGCTGCCAAAACATGAAGGAAAAATTCA
ACAAAGAAGATACTGACAGTATGAGCAGAAGACAGACTTTTTATTCTAACAATCGAAGCCCAACAAACAG
TACGGGTATGTGGAAGGACTCGCCTAAATCTTCCAAGTCCATCAAATTCATTCCTGTTTCAACTTGA

Translation (418 aa):
MRLSAGPDAGPSGNSSPWWPLATGAGNTSREAEALGEGNGPPRDVRNEELAKLEIAVLAVTFAVAVLGNS
SVLLALHRTPRKTSRMHLFIRHLSLADLAVAFFQVLPQMCWDITYRFRGPDWLCRVVKHLQVFGMFASAY
MLVVMTADRYIAVCHPLKTLQQPARRSRLMIAAAWVLSFVLSTPQYFVFSMIEVNNVTKARDCWATFIQP
WGSRAYVTWMTGGIFVAPVVILGTCYGFICYNIWCNVRGKTASRQSKGAEQAGVAFQKGFLLAPCVSSVK
SISRAKIRTVKMTFVIVTAYIVCWAPFFIIQMWSVWDPMSVWTESENPTITITALLGSLNSCCNPWIYMF
FSGHLLQDCVQSFPCCQNMKEKFNKEDTDSMSRRQTFYSNNRSPTNSTGMWKDSPKSSKSIKFIPVST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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