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Report for CCDS3442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3442.1 Public Homo sapiens 4 PGCKA1 24 110 108 CCDS HistoryNCBI Gene:55286Re-query CCDS DB by CCDS ID:3442.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3442.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000284437.6 ENSP00000284437.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000284437.6Link to Ensembl Protein Viewer:ENSP00000284437.6Re-query CCDS DB by Nucleotide ID:ENST00000284437Re-query CCDS DB by Protein ID:ENSP00000284437
Original member Current member EBI ENST00000381980.9 ENSP00000371408.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381980.9Link to Ensembl Protein Viewer:ENSP00000371408.4Re-query CCDS DB by Nucleotide ID:ENST00000381980Re-query CCDS DB by Protein ID:ENSP00000371408
Original member Current member NCBI NM_001104629.2 NP_001098099.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001104629.2Link to Protein Sequence:NP_001098099.1Re-query CCDS DB by Nucleotide ID:NM_001104629Re-query CCDS DB by Protein ID:NP_001098099Link to BLAST:NP_001098099.1
Original member Current member NCBI NM_018302.3 NP_060772.2 Accepted alive Link to Nucleotide Sequence:NM_018302.3Link to Protein Sequence:NP_060772.2Re-query CCDS DB by Nucleotide ID:NM_018302Re-query CCDS DB by Protein ID:NP_060772Link to BLAST:NP_060772.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098099.1 314 Q8IY42 314 100% 0 0
NP_060772.2 314 Q8IY42 314 100% 0 0

Chromosomal Locations for CCDS 3442.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 37588868 37588899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 37590088 37591000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGGGTGCAGGTGCTGTAAAATAATACAAAGCTATCTCTTTGATCCAGTTCAAGTGCCCTCTCCTGGCT
ATGTCAATGAAGTCAACAGCTGCAAGCTAGATGAAGACGACACTGATAAATTAAAAGGCAAATGGAGCAG
TGAAGTCTTGGTGCAGAAAAATGACCCTCAGAGGCAGGGCTCAAAGAAGACTGAGAGCAGCAGCAGGACA
GCTGATCCATGGGAGCCCTGCTGGCCTCACCAAGGGCCGCTCCCACAGGGGGACGCTGGAGGGGAACACC
ATGCCTGCGGTGTCAACGGCATCGGCCCTGCTGCCACTCCACAGCCCACTGGGAATTCCAGCCCCACCCA
GGATGACAGGGGCTCCTGGGCCAGTACTGCAAATACTGTTCCCCCAACTCAACCCTTCCTGGAAGGAGGG
GGCACCAGGAAACAGGACTGTGTGCTGCTGGCCTCAGAAGGGACCCAAGTCATGAGAAATGGAGACTCCA
GAGCTCCTTCTGAGGCAGAAAGTTTTGCCTTGGAAGTACAAGACCATGTCTTCCAGATACCAGCCCCAGA
TTACCTTCAGCATTGGGGCCCAGCTGGAGACAACGTTGATCATAATGAAAAGGACTGTGTTTTCAAGAAC
CATACTGAGGATGAATCCCTAGAGGGAATTCAGCCCCCAGTGGGGGAGCATGGTTTGAATACGCCCTTCT
CTGTGAGGAGAAGCTGGGATTCATTGAATGAGGATGTGGAAACAGAAGTTCTAAGCATCTGCTTTAATGA
GAAGGGTCCTGTTCATGCCATGCCTGTGGTTGACTCAGGAAACAGGCAGGAGGATACCCATGGCTCCGAT
GGAGATGGGGATGGGGAGATTGTGGACGAGGATGCAGCGGTGGCGGAGGCCCTTGCAGCTTTAGAAGCTG
CTACTGCAGGAGAAGATTTGGATGAGACTGATTAG

Translation (314 aa):
MGCRCCKIIQSYLFDPVQVPSPGYVNEVNSCKLDEDDTDKLKGKWSSEVLVQKNDPQRQGSKKTESSSRT
ADPWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDRGSWASTANTVPPTQPFLEGG
GTRKQDCVLLASEGTQVMRNGDSRAPSEAESFALEVQDHVFQIPAPDYLQHWGPAGDNVDHNEKDCVFKN
HTEDESLEGIQPPVGEHGLNTPFSVRRSWDSLNEDVETEVLSICFNEKGPVHAMPVVDSGNRQEDTHGSD
GDGDGEIVDEDAAVAEALAALEAATAGEDLDETD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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