NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54805.1 Public Homo sapiens 4 MAML3 24 110 108 CCDS HistoryNCBI Gene:55534Re-query CCDS DB by CCDS ID:54805.1See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 54805.1
The coding region was updated to make it identical to the current human reference genome sequence.

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 54805.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509479.6 ENSP00000421180.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000509479.6Link to Ensembl Protein Viewer:ENSP00000421180.1Re-query CCDS DB by Nucleotide ID:ENST00000509479Re-query CCDS DB by Protein ID:ENSP00000421180
Original member Current member NCBI NM_018717.5 NP_061187.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018717.5Link to Protein Sequence:NP_061187.3Re-query CCDS DB by Nucleotide ID:NM_018717Re-query CCDS DB by Protein ID:NP_061187Link to BLAST:NP_061187.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061187.3 1138 Q96JK9 1138 100% 0 0

Chromosomal Locations for CCDS 54805.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 139719323 139720323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139725751 139725835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139730416 139730667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139889357 139890967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140152860 140153327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3417 nt):
ATGGGGGATTTCGCAGCCCCCGCTGCTGCCGCGAATGGCAGTAGTATTTGCATCAACAGTAGCCTGAACA
GCAGCCTCGGCGGGGCCGGGATCGGTGTGAATAATACTCCCAATAGTACTCCCGCTGCTCCGAGTAGCAA
TCACCCGGCAGCCGGTGGATGCGGCGGCTCCGGGGGCCCCGGCGGCGGTTCGGCGGCCGTTCCCAAGCAC
AGCACCGTGGTGGAGCGGCTCCGCCAGCGCATCGAGGGCTGCCGTCGGCACCACGTCAACTGCGAGAACA
GGTACCAGCAGGCTCAGGTGGAGCAGCTGGAGCTGGAGCGCCGGGACACCGTGAGCCTCTACCAGCGGAC
CCTGGAGCAGAGGGCCAAGAAATCGGGCGCCGGCACCGGCAAACAGCAGCACCCGAGCAAACCCCAGCAA
GATGCGGAGGCTGCCTCGGCGGAGCAGAGGAACCACACGCTGATCATGCTACAAGAGACTGTGAAAAGGA
AGTTGGAAGGAGCTCGATCACCACTTAATGGAGACCAGCAGAATGGTGCTTGTGATGGGAATTTTTCTCC
GACTAGCAAACGAATTCGAAAGGACATTTCTGCGGGGATGGAAGCCATCAACAATTTGCCCAGTAACATG
CCACTGCCTTCAGCTTCTCCTCTTCACCAACTTGACCTGAAACCTTCTTTGCCCTTGCAGAACAGTGGAA
CTCACACTCCTGGGCTTCTAGAAGATCTAAGTAAGAATGGTAGGCTCCCTGAGATTAAACTTCCTGTCAA
CGGTTGCAGTGACCTGGAGGATAGCTTCACCATCTTGCAGAGCAAAGACCTCAAACAAGAACCTCTCGAT
GACCCTACTTGCATAGACACATCAGAAACATCTCTTTCAAATCAGAACAAGCTGTTCTCAGACATTAATC
TGAATGATCAGGAGTGGCAAGAATTAATAGATGAATTGGCCAACACGGTTCCTGAGGATGACATACAGGA
CCTGTTCAACGAAGACTTTGAAGAGAAGAAGGAGCCAGAATTCTCGCAGCCAGCAACTGAGACCCCTCTC
TCCCAGGAGAGTGCGAGCGTGAAGAGCGACCCCTCTCACTCTCCCTTCGCACATGTCTCCATGGGATCTC
CCCAGGCGAGGCCTTCTTCTTCTGGTCCTCCCTTTTCTACTGTCTCCACGGCCACTAGTTTACCTTCTGT
TGCCAGCACTCCCGCAGCTCCAAACCCTGCAAGCTCACCAGCAAACTGTGCTGTCCAGTCCCCTCAAACT
CCAAACCAAGCCCACACTCCAGGCCAAGCTCCACCTCGGCCTGGAAATGGTTATCTCCTGAATCCGGCAG
CAGTGACAGTGGCCGGTTCAGCGTCAGGGCCTGTGGCTGTGCCCAGCTCTGACATGTCTCCAGCAGAACA
GCTCAAACAGATGGCTGCACAGCAGCAACAAAGGGCCAAACTCATGCAGCAGAAACAGCAACAGCAACAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCACTCAAATC
AGACTTCAAATTGGTCTCCCTTAGGACCTCCCTCTAGTCCATATGGAGCAGCTTTTACTGCAGAAAAACC
AAATAGCCCAATGATGTACCCCCAAGCCTTTAACAACCAAAACCCTATAGTGCCTCCAATGGCAAACAAC
CTGCAGAAGACAACAATGAATAACTACCTCCCTCAGAATCACATGAATATGATCAATCAGCAGCCAAATA
ACTTGGGTACAAACTCCTTAAACAAACAGCACAATATTCTGACTTATGGCAACACTAAACCCCTGACCCA
CTTCAATGCAGACCTGAGTCAGAGGATGACACCACCAGTGGCCAACCCCAACAAAAACCCCTTGATGCCG
TATATCCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCCGCCACCTC
CACAGCTCCAGGCCCCCAGGGCACACCTGAGCGAAGACCAGAAACGCCTGCTTCTCATGAAGCAGAAAGG
AGTGATGAATCAGCCCATGGCTTACGCTGCACTTCCATCCCACGGTCAGGAGCAGCATCCAGTTGGACTT
CCCCGAACCACAGGCCCCATGCAGTCCTCCGTGCCCCCAGGCTCAGGTGGCATGGTCTCAGGAGCCAGTC
CCGCAGGCCCCGGCTTCCTGGGCAGCCAGCCCCAAGCAGCCATCATGAAGCAGATGCTCATTGATCAGCG
GGCCCAGTTGATAGAGCAGCAGAAGCAACAGTTCCTGCGGGAGCAAAGGCAGCAGCAGCAGCAGCAGCAG
CAGCAGATTTTGGCGGAACAGCAGTTGCAGCAATCACATCTACCCCGGCAGCACCTCCAGCCACAGCGGA
ATCCATACCCAGTGCAGCAGGTCAATCAGTTTCAAGGTTCTCCCCAGGATATAGCAGCCGTAAGAAGCCA
AGCAGCCCTCCAGAGCATGCGAACGTCACGGCTGATGGCACAGAACGCAGGCATGATGGGAATAGGACCC
TCCCAGAACCCTGGGACGATGGCCACCGCAGCTGCGCAGTCGGAGATGGGACTGGCCCCTTATAGCACCA
CGCCTACCAGCCAACCAGGAATGTACAATATGAGCACAGGCATGACCCAAATGTTGCAGCATCCAAACCA
AAGTGGCATGAGCATCACACATAACCAAGCCCAGGGACCGAGGCAACCTGCCTCTGGGCAGGGGGTTGGA
ATGGTGAGTGGCTTTGGTCAGAGCATGCTGGTGAACTCAGCCATTACCCAGCAACATCCACAGATGAAAG
GGCCAGTAGGCCAGGCCTTGCCTAGGCCCCAAGCCCCTCCAAGGCTGCAGAGCCTTATGGGAACAGTCCA
GCAAGGAGCACAAAGCTGGCAACAGAGGAGCTTGCAGGGCATGCCTGGGAGGACTAGTGGAGAATTGGGA
CCATTCAACAATGGCGCCAGCTACCCTCTTCAAGCTGGGCAGCCGAGACTGACCAAGCAGCACTTCCCAC
AGGGACTGAGCCAGTCAGTCGTGGATGCTAACACGGGCACAGTGAGGACCCTCAACCCAGCTGCCATGGG
TCGGCAGATGATGCCATCGCTCCCGGGGCAGCAAGGCACCAGCCAGGCGAGGCCAATGGTCATGTCTGGC
CTGAGCCAGGGAGTCCCAGGCATGCCAGCGTTCAGCCAGCCCCCAGCACAGCAGCAGATACCCAGTGGCA
GCTTTGCTCCAAGCAGCCAGAGCCAAGCCTATGAGCGGAATGCCCCTCAGGACGTGTCATACAATTACAG
TGGCGACGGAGCTGGGGGTTCCTTCCCTGGCCTCCCGGACGGTGCAGACCTTGTGGACTCCATCATCAAA
GGCGGGCCAGGGGACGAGTGGATGCAGGAGCTTGATGAATTGTTTGGTAACCCCTAA

Translation (1138 aa):
MGDFAAPAAAANGSSICINSSLNSSLGGAGIGVNNTPNSTPAAPSSNHPAAGGCGGSGGPGGGSAAVPKH
STVVERLRQRIEGCRRHHVNCENRYQQAQVEQLELERRDTVSLYQRTLEQRAKKSGAGTGKQQHPSKPQQ
DAEAASAEQRNHTLIMLQETVKRKLEGARSPLNGDQQNGACDGNFSPTSKRIRKDISAGMEAINNLPSNM
PLPSASPLHQLDLKPSLPLQNSGTHTPGLLEDLSKNGRLPEIKLPVNGCSDLEDSFTILQSKDLKQEPLD
DPTCIDTSETSLSNQNKLFSDINLNDQEWQELIDELANTVPEDDIQDLFNEDFEEKKEPEFSQPATETPL
SQESASVKSDPSHSPFAHVSMGSPQARPSSSGPPFSTVSTATSLPSVASTPAAPNPASSPANCAVQSPQT
PNQAHTPGQAPPRPGNGYLLNPAAVTVAGSASGPVAVPSSDMSPAEQLKQMAAQQQQRAKLMQQKQQQQQ
QQQQQQQQQQQQQQQQQQQQHSNQTSNWSPLGPPSSPYGAAFTAEKPNSPMMYPQAFNNQNPIVPPMANN
LQKTTMNNYLPQNHMNMINQQPNNLGTNSLNKQHNILTYGNTKPLTHFNADLSQRMTPPVANPNKNPLMP
YIQQQQQQQQQQQQQQQQQQPPPPQLQAPRAHLSEDQKRLLLMKQKGVMNQPMAYAALPSHGQEQHPVGL
PRTTGPMQSSVPPGSGGMVSGASPAGPGFLGSQPQAAIMKQMLIDQRAQLIEQQKQQFLREQRQQQQQQQ
QQILAEQQLQQSHLPRQHLQPQRNPYPVQQVNQFQGSPQDIAAVRSQAALQSMRTSRLMAQNAGMMGIGP
SQNPGTMATAAAQSEMGLAPYSTTPTSQPGMYNMSTGMTQMLQHPNQSGMSITHNQAQGPRQPASGQGVG
MVSGFGQSMLVNSAITQQHPQMKGPVGQALPRPQAPPRLQSLMGTVQQGAQSWQQRSLQGMPGRTSGELG
PFNNGASYPLQAGQPRLTKQHFPQGLSQSVVDANTGTVRTLNPAAMGRQMMPSLPGQQGTSQARPMVMSG
LSQGVPGMPAFSQPPAQQQIPSGSFAPSSQSQAYERNAPQDVSYNYSGDGAGGSFPGLPDGADLVDSIIK
GGPGDEWMQELDELFGNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH