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Report for CCDS14622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14622.1 Public Homo sapiens X ZNF280C 24 110 108 CCDS HistoryNCBI Gene:55609Re-query CCDS DB by CCDS ID:14622.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14622.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370978.9 ENSP00000360017.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370978.9Link to Ensembl Protein Viewer:ENSP00000360017.4Re-query CCDS DB by Nucleotide ID:ENST00000370978Re-query CCDS DB by Protein ID:ENSP00000360017
Original member Current member NCBI NM_017666.5 NP_060136.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017666.5Link to Protein Sequence:NP_060136.1Re-query CCDS DB by Nucleotide ID:NM_017666Re-query CCDS DB by Protein ID:NP_060136Link to BLAST:NP_060136.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060136.1 737 Q8ND82 737 100% 0 0

Chromosomal Locations for CCDS 14622.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 130204977 130204992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130205117 130205153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130205297 130205415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130209653 130209715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130215193 130215333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130215791 130216101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130220349 130220480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130226759 130226905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130227682 130227782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130228977 130229134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130230510 130230727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130236214 130236320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130236469 130236639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130239582 130239693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130243563 130243699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130243800 130243865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130246859 130247005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 130260419 130260449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2214 nt):
ATGGATGACGACAAACCTTTTCAACCAAAAAACATTTCAAAAATGGCAGAACTCTTTATGGAATGTGAAG
AAGAAGAGCTAGAGCCATGGCAGAAGAAAGTAGAAGAAACTCAGGATGAGGATGACGATGAACTGATCTT
TGTTGGAGAGATATCAAGTTCAAAACCAGCCATTTCAAATATTTTGAACAGAGGCCACTCCAGCTCATCT
TCAAAAGGAATAAAGAGTGAGCCACACAGTCCAGGTATTCCTGAAATATTCAGGACTGCAAGTCAACGCT
GCAGAGACCCACCATCAAATCCAGTGGCTGCCTCGCCTAGATTTCATCTTGTATCTAAATCTTCACAAAG
CTCTGTTACTGTTGAGAATGCGTCTAAACCTGATTTTACAAAGAATTCACAAGTTGGATCGGATAATTCT
TCAATTTTACTGTTTGACTCGACCCAGGAATCACTACCACCATCCCAAGACATACCAGCAATTTTTAGAG
AAGGTATGAAAAATACTTCATATGTGTTGAAACATCCTTCTACTTCTAAAGTAAACAGTGTTACTCCAAA
AAAACCAAAGACCAGTGAAGATGTTCCTCAGATAAATCCCTCCACTTCATTGCCTTTAATTGGCTCTCCT
CCAGTGACATCCTCCCAAGTTATGCTGTCAAAAGGTACAAATACCTCATCTCCATATGATGCTGGAGCAG
ATTACCTAAGAGCTTGTCCAAAGTGCAATGTTCAGTTCAATCTTTTGGATCCTTTGAAATACCACATGAA
GCATTGTTGTCCAGACATGATAACTAAATTTTTGGGAGTAATTGTTAAATCAGAACGTCCATGTGATGAA
GACAAGACTGATTCAGAGACAGGAAAGTTGATCATGTTAGTCAATGAGTTTTATTATGGAAGGCATGAAG
GAGTCACTGAGAAAGAGCCAAAGACTTACACAACCTTTAAATGCTTCAGTTGCTCGAAAGTTCTTAAAAA
TAATATTAGGTTTATGAACCACATGAAACATCACTTGGAACTTGAGAAGCAGAACAATGAAAGCTGGGAA
AACCACACCACCTGCCAGCACTGTTACCGGCAATATCCCACACCCTTCCAACTGCAGTGCCACATTGAGA
GTACACACACTCCCCATGAGTTTTCTACTATTTGCAAAATCTGTGAATTATCATTTGAAACAGAGCATAT
TCTTTTACAACATATGAAGGACACCCATAAACCTGGTGAAATGCCATATGTTTGCCAGGTTTGCCAGTTT
AGATCATCAACATTTTCTGATGTAGAAGCTCATTTTAGAGCAGCCCATGAAAACACTAAGAACTTGCTAT
GTCCATTTTGCCTCAAAGTTAGTAAAATGGCAACCCCCTACATGAATCATTACATGAAGCATCAGAAAAA
AGGAGTTCATCGTTGCCCAAAATGCAGACTACAATTTTTGACCAGCAAGGAGAAAGCTGAACATAAGGCG
CAGCATCGTACATTTATAAAGCCTAAAGAACTAGAAGGATTGCCTCCTGGAGCAAAAGTTACTATTCGAG
CTTCACTTGGACCTCTCCAGTCAAAATTACCAACTGCACCTTTCGGTTGCGCTCCAGGCACTTCTTTTCT
TCAGGTCACACCTCCGACATCTCAAAATACAACTGCTAGAAATCCTAGAAAATCTAATGCCAGTAGATCT
AAGACAAGTAAGCTTCATGCAACTACATCCACTGCAAGTAAAGTTAATACAAGTAAGCCAAGGGGACGTA
TAGCTAAGTCCAAAGCAAAACCCTCTTACAAGCAAAAGCGACAGCGCAACAGAAAAAATAAAATGAGCCT
TGCTTTGAAGAACATAAGGTGTCGTCGGGGAATTCACAAGTGCATTGAATGTCATTCCAAAATAAAAGAT
TTTGCAAGCCACTTTTCTATATACATCCACTGCAGTTTTTGCAAGTACAATACTAACTGTAACAAAGCCT
TTGTAAATCATATGATGAGCTCTCATAGCAACCATCCAGGTAAACGGTTTTGTATTTTCAAGAAGCATTC
AGGAACTCTCAGGGGCATTACTCTAGTGTGCCTTAAATGTGATTTCCTAGCTGATTCTTCCGGCTTAGAT
CGTATGGCTAAACACTTAAGTCAACGTAAAACTCATACTTGCCAAGTTATAATAGAGAATGTTTCCAAAA
GTACCTCAACTTCTGAACCCACTACTGGCTGCTCATTGAAATAG

Translation (737 aa):
MDDDKPFQPKNISKMAELFMECEEEELEPWQKKVEETQDEDDDELIFVGEISSSKPAISNILNRGHSSSS
SKGIKSEPHSPGIPEIFRTASQRCRDPPSNPVAASPRFHLVSKSSQSSVTVENASKPDFTKNSQVGSDNS
SILLFDSTQESLPPSQDIPAIFREGMKNTSYVLKHPSTSKVNSVTPKKPKTSEDVPQINPSTSLPLIGSP
PVTSSQVMLSKGTNTSSPYDAGADYLRACPKCNVQFNLLDPLKYHMKHCCPDMITKFLGVIVKSERPCDE
DKTDSETGKLIMLVNEFYYGRHEGVTEKEPKTYTTFKCFSCSKVLKNNIRFMNHMKHHLELEKQNNESWE
NHTTCQHCYRQYPTPFQLQCHIESTHTPHEFSTICKICELSFETEHILLQHMKDTHKPGEMPYVCQVCQF
RSSTFSDVEAHFRAAHENTKNLLCPFCLKVSKMATPYMNHYMKHQKKGVHRCPKCRLQFLTSKEKAEHKA
QHRTFIKPKELEGLPPGAKVTIRASLGPLQSKLPTAPFGCAPGTSFLQVTPPTSQNTTARNPRKSNASRS
KTSKLHATTSTASKVNTSKPRGRIAKSKAKPSYKQKRQRNRKNKMSLALKNIRCRRGIHKCIECHSKIKD
FASHFSIYIHCSFCKYNTNCNKAFVNHMMSSHSNHPGKRFCIFKKHSGTLRGITLVCLKCDFLADSSGLD
RMAKHLSQRKTHTCQVIIENVSKSTSTSEPTTGCSLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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