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Report for CCDS13098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13098.1 Public Homo sapiens 20 FERMT1 24 110 108 CCDS HistoryNCBI Gene:55612Re-query CCDS DB by CCDS ID:13098.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13098.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217289.9 ENSP00000217289.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217289.9Link to Ensembl Protein Viewer:ENSP00000217289.4Re-query CCDS DB by Nucleotide ID:ENST00000217289Re-query CCDS DB by Protein ID:ENSP00000217289
Original member Current member EBI ENST00000699095.1 ENSP00000514127.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699095.1Link to Ensembl Protein Viewer:ENSP00000514127.1Re-query CCDS DB by Nucleotide ID:ENST00000699095Re-query CCDS DB by Protein ID:ENSP00000514127
Original member Current member NCBI NM_017671.5 NP_060141.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017671.5Link to Protein Sequence:NP_060141.3Re-query CCDS DB by Nucleotide ID:NM_017671Re-query CCDS DB by Protein ID:NP_060141Link to BLAST:NP_060141.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060141.3 677 Q9BQL6-1 677 100% 0 0

Chromosomal Locations for CCDS 13098.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 6077173 6077346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6079436 6079577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6084040 6084164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6085066 6085287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6087777 6087883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6088965 6089089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6094939 6094988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6096902 6097033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6097524 6097631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6107532 6107634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6110298 6110511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6112477 6112623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6115811 6116044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6119404 6119554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGCTGTCATCCACTGACTTTACATTTGCTTCCTGGGAGCTTGTGGTCCGCGTTGACCATCCCAATGAAG
AG
CAGCAGAAAGACGTCACACTGAGAGTATCTGGAGACCTTCATGTTGGAGGAGTGATGCTCAAGTTAGT
A
GAACAGATCAATATATCCCAAGACTGGTCAGACTTTGCTCTTTGGTGGGAACAGAAGCATTGCTGGCTT
CTG
AAAACCCACTGGACCCTGGACAAATATGGGGTCCAGGCAGATGCAAAGCTTCTCTTCACCCCTCAGC
AT
AAAATGCTGCGCCTTCGTCTGCCGAATTTGAAGATGGTGAGGTTGCGAGTCAGCTTCTCAGCTGTGGT
T
TTTAAAGCTGTCAGTGATATCTGCAAAATCCTGAATATTAGAAGATCAGAAGAGCTTTCCTTGTTAAAG
CCG
TCTGGTGACTATTTTAAGAAGAAGAAGAAAAAAGACAAAAATAATAAGGAACCCATAATTGAAGATA
TT
CTAAACCTGGAGAGTTCTCCAACAGCTTCAGGTTCATCAGTAAGTCCTGGTTTATACAGTAAAACCAT
G
ACCCCTATATATGACCCCATCAATGGAACACCAGCATCATCCACCATGACTTGGTTCAGTGACAGCCCT
TTG
ACGGAACAAAACTGCAGCATCCTCGCATTCAGCCAACCCCCCCAGTCCCCAGAAGCACTTGCGGATA
TG
TACCAGCCTCGGTCTCTGGTTGATAAAGCCAAGCTCAATGCAGGTTGGCTAGACTCCTCACGCTCCCT
T
ATGGAACAAGGCATCCAAGAGGATGAGCAGCTGCTCTTACGATTTAAATATTATTCTTTCTTCGACTTG
AAT
CCTAAATATGATGCTGTCCGAATAAACCAACTCTATGAGCAAGCCAGGTGGGCCATTCTCTTAGAAG
AA
ATTGATTGCACAGAGGAAGAAATGTTGATCTTTGCAGCTCTACAGTACCACATTAGCAAACTGTCGTT
G
TCTGCTGAAACACAGGATTTTGCAGGCGAGTCCGAGGTTGATGAAATAGAAGCGGCGCTTTCTAATTTG
GAA
GTAACCCTAGAAGGTGGAAAAGCGGACAGCCTTTTGGAGGACATTACTGATATCCCTAAACTTGCAG
AT
AATCTCAAATTATTTAGGCCCAAGAAGTTACTACCAAAAGCTTTCAAACAATATTGGTTTATCTTTAA
A
GACACATCCATAGCATACTTTAAAAATAAGGAACTTGAACAAGGAGAACCACTAGAAAAACTAAATCTT
AGA
GGCTGCGAAGTTGTGCCCGATGTAAATGTAGCAGGAAGAAAATTTGGAATCAAGTTACTAATCCCTG
TT
GCCGATGGTATGAATGAAATGTATTTGAGATGTGACCATGAGAATCAATACGCCCAATGGATGGCTGC
C
TGCATGTTGGCATCGAAGGGCAAAACCATGGCAGACAGCTCCTACCAGCCAGAGGTCCTCAACATCCTT
TCA
TTTCTGAGGATGAAAAACAGGAACTCTGCATCTCAGGTGGCTTCCAGTCTCGAAAACATGGATATGA
AC
CCAGAATGTTTTGTGTCACCACGGTGTGCAAAAAGACACAAATCCAAACAGCTGGCCGCCCGGATCCT
G
GAGGCGCACCAGAACGTGGCCCAGATGCCCCTGGTCGAAGCCAAGCTGCGGTTCATCCAGGCGTGGCAG
TCA
CTGCCTGAGTTTGGCCTCACCTACTACCTTGTCAGATTTAAAGGAAGCAAAAAAGATGACATTCTGG
GA
GTTTCATATAACAGGTTGATTAAAATTGATGCAGCCACCGGGATTCCAGTGACAACATGGAGATTCAC
A
AATATCAAACAGTGGAATGTAAACTGGGAAACCCGGCAGGTGGTCATCGAGTTTGACCAAAACGTCTTT
ACT
GCTTTCACCTGCCTGAGTGCAGATTGCAAGATTGTGCACGAGTACATTGGCGGCTACATTTTCTTGT
CC
ACCCGCTCCAAGGACCAGAATGAAACACTCGATGAGGACTTGTTCCACAAATTGACCGGCGGTCAGGA
T
TGA


Translation (677 aa):
MLSSTDFTFASWELVVRVDHPNEEQQKDVTLRVSGDLHVGGVMLKLVEQINISQDWSDFALWWEQKHCWL
L
KTHWTLDKYGVQADAKLLFTPQHKMLRLRLPNLKMVRLRVSFSAVVFKAVSDICKIL
NIRRSEELSLLK
P
SGDYFKKKKKKDKNNKEPIIEDILNLESSPTASGSS
VSPGLYSKTMTPIYDPINGTPASSTMTWFSDSP
L
TEQNCSILAFSQPPQSPEALADMYQPRSLVDKAKLNA
GWLDSSRSLMEQGIQEDEQLLLRFKYYSFFDL
N
PK
YDAVRINQLYEQARWAILLEEIDCTEEEMLIFAALQYHISKLSLSAETQDFAGESEVDEIEAALSNL
E
VTLEGGKADSLL
EDITDIPKLADNLKLFRPKKLLPKAFKQYWFIFKDTSIAYFKNKELEQGEPLEKLNL
R
GCEVVPDVNVAGRKFGIKLLIPVADGMNEMYLRCDHENQYAQWMAACMLASKGKTMADSSYQPEVLNIL
S
FLRMKNRNSASQVASSLENMDMNPECFVSPRCAKRHKSKQ
LAARILEAHQNVAQMPLVEAKLRFIQAWQ
S
LPEFGLTYYLV
RFKGSKKDDILGVSYNRLIKIDAATGIPVTTWRFTNIKQWNVNWETRQVVIEFDQNVF
T
AFTCLSADCKIVHEYIGGYIFLSTRSKDQNETLDEDLFHKLTGGQD




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser