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Report for CCDS65700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
65700.1 Public Homo sapiens 1 TOMM40L 24 110 108 CCDS HistoryNCBI Gene:84134Re-query CCDS DB by CCDS ID:65700.1Re-query CCDS DB by GeneID:84134See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 65700.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000545897.5 ENSP00000443233.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545897.5Link to Ensembl Protein Viewer:ENSP00000443233.1Re-query CCDS DB by Nucleotide ID:ENST00000545897Re-query CCDS DB by Protein ID:ENSP00000443233
Original member Current member NCBI NM_001286373.2 NP_001273302.1 Accepted alive Link to Nucleotide Sequence:NM_001286373.2Link to Protein Sequence:NP_001273302.1Re-query CCDS DB by Nucleotide ID:NM_001286373Re-query CCDS DB by Protein ID:NP_001273302Link to BLAST:NP_001273302.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273302.1 274 Q969M1-2 274 100% 0 0

Chromosomal Locations for CCDS 65700.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161226490 161226604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161226888 161226955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161227258 161227350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161227884 161227989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161228186 161228308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161228428 161228504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161228715 161228817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161228956 161229095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGGGAACACATTGGGCCTGGCACCAATGGGGACTTTGCCCCGCCGGAGCCCCCGCCGAGAGGAACCCC
TGCCCAACCCTGGGAGCTTCGATGAGCTGCACCGTCTATGCAAAGATGTATTCCCAGCACAGATGGAGGG
AGTGAAGCTCGTTGTCAACAAGGTTCTGAGCAGCCATTTCCAGGTGGCGCACACTATACACATGAGTGCC
CTGGGCTTGCCGGGATATCACCTCCATGCGGCCTATGCAGGGGATTGGCAGCTCAGTCCCACTGAGACGC
AGCAGGCCAAGTTCCTGACATGGCAGTTTGATGGCGAGTATCGGGGAGATGACTACACAGCCACTCTGAC
CCTAGGAAATCCTGACCTGATTGGGGAGTCGGTGATCATGGTTGCTCACTTCCTGCAGAGCCTCACTCAT
CGGCTGGTGCTGGGAGGAGAGCTAGTTTATCACCGGCGGCCAGGCGAAGAGGGGGCCATCTTGACACTGG
CTGGGAAGTACTCGGCTGTACACTGGGTAGCTACATTGAATGTGGGATCAGGCGGGGCCCATGCAAGTTA
CTACCACAGGGCAAATGAACAGGTTCAGGTTGGAGTGGAGTTTGAGGCAAACACAAGGCTACAAGACACA
ACATTCTCCTTTGGTTACCACCTGACTCTGCCCCAGGCCAACATGGTATTTAGAGGCTTGGTGGATAGTA
ACTGGTGTGTAGGTGCTGTGCTGGAGAAGAAGATGCCCCCTCTGCCTGTCACCCTAGCCCTTGGAGCCTT
CCTCAATCACTGGCGCAACAGATTCCATTGTGGCTTCAGCATCACTGTGGGCTGA

Translation (274 aa):
MGNTLGLAPMGTLPRRSPRREEPLPNPGSFDELHRLCKDVFPAQMEGVKLVVNKVLSSHFQVAHTIHMSA
LGLPGYHLHAAYAGDWQLSPTETQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGESVIMVAHFLQSLTH
RLVLGGELVYHRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAHASYYHRANEQVQVGVEFEANTRLQDT
TFSFGYHLTLPQANMVFRGLVDSNWCVGAVLEKKMPPLPVTLALGAFLNHWRNRFHCGFSITVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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