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Report for CCDS12954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12954.1 Public Homo sapiens 19 ZNF416 24 110 108 CCDS HistoryNCBI Gene:55659Re-query CCDS DB by CCDS ID:12954.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12954.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000196489.4 ENSP00000196489.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000196489.4Link to Ensembl Protein Viewer:ENSP00000196489.2Re-query CCDS DB by Nucleotide ID:ENST00000196489Re-query CCDS DB by Protein ID:ENSP00000196489
Original member Current member NCBI NM_017879.3 NP_060349.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017879.3Link to Protein Sequence:NP_060349.1Re-query CCDS DB by Nucleotide ID:NM_017879Re-query CCDS DB by Protein ID:NP_060349Link to BLAST:NP_060349.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060349.1 594 Q9BWM5 594 100% 0 0

Chromosomal Locations for CCDS 12954.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57572119 57573701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57575804 57575930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57578057 57578098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57578672 57578704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGGCGGCGGCCGTGCTTAGGGATTCGACTTCGGTTCCCGTGACTGCAGAAGCTAAACTTATGGGCTTTA
CACAGGGCTGTGTGACCTTTGAGGACGTGGCCATTTACTTCTCCCAGGAAGAATGGGGGCTCCTTGATGA
GGCTCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAACTTTGCACTTATAACTGCGCTGGTTTGTTGG
CATGGGATGGAGGATGAAGAGACACCTGAGCAAAGTGTTTCTGTAGAAGGAGTACCTCAGGTCAGGACTC
CAGAGGCCAGTCCATCCACCCAGAAGATTCAATCCTGTGACATGTGTGTCCCATTCCTGACCGACATTTT
GCACCTGACCGATTTGCCTGGGCAGGAACTATACTTGACTGGGGCATGTGCGGTCTTTCACCAGGACCAG
AAGCATCATAGTGCAGAGAAACCCTTGGAAAGTGACATGGACAAGGCCTCATTTGTGCAGTGCTGCCTGT
TCCATGAGTCAGGAATGCCTTTCACCAGCAGTGAGGTTGGGAAGGACTTCCTAGCCCCATTGGGCATTCT
TCAGCCGCAAGCTATTGCTAACTATGAGAAGCCAAACAAAATCAGCAAATGTGAGGAGGCCTTTCATGTT
GGAATAAGTCATTACAAGTGGAGTCAATGCAGGAGAGAGTCCAGCCACAAACACACTTTTTTTCACCCTA
GAGTCTGCACTGGAAAAAGGCTTTATGAATCTAGCAAATGTGGGAAAGCCTGCTGCTGTGAGTGCTCCCT
TGTTCAGCTGCAAAGAGTCCACCCTGGAGAAAGGCCTTATGAGTGCAGTGAATGTGGGAAATCTTTTAGC
CAAACCTCTCATCTGAATGATCATCGGAGAATCCACACTGGAGAAAGGCCTTATGTGTGTGGTCAGTGTG
GGAAATCATTTAGCCAAAGAGCCACCCTCATTAAACATCACAGAGTTCACACTGGAGAAAGGCCTTACGA
GTGTGGTGAATGTGGGAAATCTTTTAGCCAAAGTTCCAACCTTATTGAACATTGCAGAATTCACACTGGA
GAAAGGCCTTATGAGTGTGATGAATGTGGAAAAGCCTTTGGGTCCAAATCCACTCTTGTTCGACACCAGA
GAACTCACACAGGAGAAAAGCCATATGAGTGTGGTGAATGTGGGAAATTATTCAGACAAAGCTTCAGCCT
TGTTGTACACCAGAGAATTCACACTACAGCAAGGCCTTATGAGTGTGGCCAGTGTGGGAAATCATTTAGC
CTAAAGTGTGGCCTCATTCAGCACCAGTTAATTCACAGTGGAGCTAGGCCCTTTGAGTGTGATGAGTGCG
GAAAATCCTTTAGCCAAAGAACCACCCTCAATAAACACCACAAAGTTCACACTGCAGAAAGGCCTTATGT
ATGTGGGGAATGTGGGAAAGCTTTTATGTTCAAATCTAAACTTGTTAGGCACCAGAGAACTCACACTGGA
GAAAGGCCTTTTGAGTGCAGTGAATGTGGGAAATTTTTTAGACAAAGCTATACCCTCGTTGAACACCAGA
AAATTCACACTGGATTAAGGCCTTACGACTGTGGACAGTGCGGGAAATCCTTTATCCAAAAGTCTAGCCT
CATTCAACACCAAGTGGTTCACACAGGAGAAAGGCCATATGAGTGTGGCAAATGTGGGAAGTCCTTTACA
CAACACTCTGGCCTCATTCTCCACCGAAAATCTCACACTGTGGAGAGGCCTCGTGACAGCAGCAAATGTG
GAAAACCCTACAGCCCAAGATCTAACATTGTTTAA

Translation (594 aa):
MAAAVLRDSTSVPVTAEAKLMGFTQGCVTFEDVAIYFSQEEWGLLDEAQRLLYRDVMLENFALITALVCW
HGMEDEETPEQSVSVEGVPQVRTPEASPSTQKIQSCDMCVPFLTDILHLTDLPGQELYLTGACAVFHQDQ
KHHSAEKPLESDMDKASFVQCCLFHESGMPFTSSEVGKDFLAPLGILQPQAIANYEKPNKISKCEEAFHV
GISHYKWSQCRRESSHKHTFFHPRVCTGKRLYESSKCGKACCCECSLVQLQRVHPGERPYECSECGKSFS
QTSHLNDHRRIHTGERPYVCGQCGKSFSQRATLIKHHRVHTGERPYECGECGKSFSQSSNLIEHCRIHTG
ERPYECDECGKAFGSKSTLVRHQRTHTGEKPYECGECGKLFRQSFSLVVHQRIHTTARPYECGQCGKSFS
LKCGLIQHQLIHSGARPFECDECGKSFSQRTTLNKHHKVHTAERPYVCGECGKAFMFKSKLVRHQRTHTG
ERPFECSECGKFFRQSYTLVEHQKIHTGLRPYDCGQCGKSFIQKSSLIQHQVVHTGERPYECGKCGKSFT
QHSGLILHRKSHTVERPRDSSKCGKPYSPRSNIV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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