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Report for CCDS33043.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33043.2 Public Homo sapiens 19 SMG9 24 110 108 CCDS HistoryNCBI Gene:56006Re-query CCDS DB by CCDS ID:33043.2See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33043.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000270066.11 ENSP00000270066.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000270066.11Link to Ensembl Protein Viewer:ENSP00000270066.6Re-query CCDS DB by Nucleotide ID:ENST00000270066Re-query CCDS DB by Protein ID:ENSP00000270066
Original member Current member NCBI NM_019108.4 NP_061981.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019108.4Link to Protein Sequence:NP_061981.2Re-query CCDS DB by Nucleotide ID:NM_019108Re-query CCDS DB by Protein ID:NP_061981Link to BLAST:NP_061981.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061981.2 520 Q9H0W8-1 520 100% 0 0

Chromosomal Locations for CCDS 33043.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43731596 43731674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43732858 43733002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43733324 43733452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43733626 43733733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43734389 43734495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43737597 43737682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43738122 43738217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43740107 43740218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43744772 43744884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43747442 43747539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43747633 43747897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43747978 43748052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43750592 43750741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGTCTGAGTCTGGACACAGTCAGCCTGGACTCTATGGGATAGAGCGGCGGCGACGGTGGAAGGAGCCTG
GCTCTGGTGGCCCCCAGAATCTCTCTGGGCCTGGTGGTCGGGAGAGGGACTACATTGCACCATGGGAAAG
AGAGAGAAGGGATGCCAGCGAAGAGACAAGCACTTCCGTCATGCAGAAAACCCCCATCATCCTCTCAAAA
CCTCCAGCAGAGCGGTCAAAACAGCCACCACCTCCAACAGCCCCTGCTGCCCCGCCTGCTCCAGCCCCTC
TGGAGAAGCCCATCGTTCTCATGAAGCCACGGGAGGAGGGGAAGGGGCCTGTGGCCGTGACAGGTGCCTC
TACCCCTGAGGGCACCGCCCCACCACCCCCTGCAGCCCCTGCGCCACCCAAGGGGGAGAAGGAGGGGCAG
AGACCCACACAGCCTGTGTACCAGATCCAGAACCGGGGCATGGGCACTGCCGCACCAGCAGCCATGGACC
CTGTCGTGGGTCAGGCCAAACTACTGCCCCCAGAGCGCATGAAGCACAGCATCAAGTTGGTGGATGACCA
GATGAATTGGTGTGACAGTGCCATCGAGTACCTGTTGGATCAGACTGATGTGTTGGTGGTTGGTGTCCTG
GGCCTCCAGGGGACAGGCAAGTCCATGGTCATGTCATTGTTGTCAGCCAACACTCCAGAGGAGGACCAGA
GGACTTATGTTTTCCGGGCCCAGAGCGCTGAAATGAAGGAACGAGGGGGCAACCAGACCAGTGGCATCGA
CTTCTTTATTACCCAAGAACGGATTGTTTTCCTGGACACACAGCCCATCCTGAGCCCTTCTATCCTAGAC
CATCTCATCAATAATGACCGCAAACTGCCTCCAGAGTACAACCTTCCCCACACTTACGTTGAAATGCAGT
CACTCCAGATTGCTGCCTTCCTTTTCACGGTCTGCCATGTGGTGATTGTTGTCCAGGACTGGTTCACAGA
CCTCAGTCTCTACAGGTTCCTGCAGACAGCAGAGATGGTGAAGCCCTCCACCCCATCCCCCAGCCACGAG
TCCAGCAGCTCATCGGGCTCCGATGAAGGCACCGAGTACTACCCCCACCTAGTCTTCTTGCAGAACAAAG
CTCGCCGAGAGGACTTCTGTCCTCGGAAGCTGCGGCAGATGCACCTGATGATTGACCAGCTCATGGCCCA
CTCCCACCTGCGTTACAAGGGAACTCTGTCCATGTTACAATGCAATGTCTTCCCGGGGCTTCCACCTGAC
TTCCTGGACTCTGAGGTCAACTTATTCCTGGTACCCTTCATGGACAGTGAAGCAGAGAGTGAAAACCCAC
CAAGAGCAGGACCTGGTTCCAGCCCACTCTTCTCCCTGCTGCCTGGGTATCGTGGCCACCCCAGTTTCCA
GTCCTTGGTGAGCAAGCTCCGGAGCCAAGTGATGTCCATGGCCCGGCCACAGCTGTCACACACGATCCTC
ACCGAGAAGAACTGGTTCCACTACGCTGCCCGGATCTGGGATGGGGTGAGAAAGTCCTCTGCTCTGGCAG
AGTACAGCCGCCTGCTGGCCTGA

Translation (520 aa):
MSESGHSQPGLYGIERRRRWKEPGSGGPQNLSGPGGRERDYIAPWERERRDASEETSTSVMQKTPIILSK
PPAERSKQPPPPTAPAAPPAPAPLEKPIVLMKPREEGKGPVAVTGASTPEGTAPPPPAAPAPPKGEKEGQ
RPTQPVYQIQNRGMGTAAPAAMDPVVGQAKLLPPERMKHSIKLVDDQMNWCDSAIEYLLDQTDVLVVGVL
GLQGTGKSMVMSLLSANTPEEDQRTYVFRAQSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILD
HLINNDRKLPPEYNLPHTYVEMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHE
SSSSSGSDEGTEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPD
FLDSEVNLFLVPFMDSEAESENPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSMARPQLSHTIL
TEKNWFHYAARIWDGVRKSSALAEYSRLLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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