NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54917.1 Public Homo sapiens 5 PCDHA5 24 110 108 CCDS HistoryNCBI Gene:56143Re-query CCDS DB by CCDS ID:54917.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54917.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000529859.2 ENSP00000436557.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000529859.2Link to Ensembl Protein Viewer:ENSP00000436557.1Re-query CCDS DB by Nucleotide ID:ENST00000529859Re-query CCDS DB by Protein ID:ENSP00000436557
Original member Current member NCBI NM_018908.3 NP_061731.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018908.3Link to Protein Sequence:NP_061731.1Re-query CCDS DB by Nucleotide ID:NM_018908Re-query CCDS DB by Protein ID:NP_061731Link to BLAST:NP_061731.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061731.1 936 Q9Y5H7-1 936 100% 0 0

Chromosomal Locations for CCDS 54917.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140821776 140824127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140978949 140979007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140982475 140982563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141009627 141009937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2811 nt):
ATGGTATATTCCCGGAGAGGAAGTCTGGGATCCCGGCTCCTGCTGCTCTGGCTTCTCCTTGCCTACTGGA
AGGCAGGGAGCGGCCAGCTCCACTACTCGATCCCGGAGGAAGCCAAACACGGAACCTTCGTTGGCCGCAT
CGCGCAGGACCTAGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAGGGCCGC
GGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGGAGC
TGTGCCGGCGGAGGGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCA
TGTGGAGGTGGCAGTGAAGGACATCAATGACAATCCGCCCAGGTTCTCCAGACAAGAACAAAGATTATTC
ATTTTAGAGTCAAGAATGCCAGATTCGCGGTTTCCGCTAGAGGGCGCGTCGGATTTGGATATTGGAGCAA
ATGCACAATTGAGATACAGGTTAAATCCAAACGAATATTTTGACTTAGATGTTAAAACAAATGAAGAAGA
AACGAACTTTTTAGAGCTGGTTTTGAGGAAATCCTTAGATAGAGAAGAAACACAAGAACACCGTTTATTA
GTGATTGCAACTGATGGAGGAAAACCCGAACTAACAGGTACAGTTCAGTTGTTGATCAATGTATTGGATG
CTAATGATAACGCCCCAGAATTTGATAAATCCATTTATAATGTCAGATTGTTGGAAAATGCACCAAGTGG
GACATTAGTTATTAAACTGAACGCCTCAGATGCAGATGAGGGCATCAATAAGGAAATAGTGTATTTCTTT
AGTAATCTTGTTCTTGACGATGTAAAGTCCAAATTTATAATTAATTCTAATACTGGTGAAATAAAAGTTA
ACGGGGAACTGGATTATGAAGACTATAACTCATATGAAATTAATATTGATGCCATGGATAAAAGTACATT
CCCATTATCAGGACACTGTAAAGTAGTAGTGAAACTCCTGGATGTGAATGATAATACCCCAGAGATGGCC
ATAACCACCCTTTTCCTGCCTGTCAAAGAGGACGCTCCACTCAGCACGGTCATTGCTCTGATCAGCGTGT
CTGACCGTGACTCAGGTGCCAACGGGCAGGTGACCTGCTCCCTAATGCCCCACGTTCCCTTCAAGCTGGT
GTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAGCGTGTCGGTCTAT
GAGCTGGTGGTGACCGCGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCACCGCCAGCGTGTCTGTGGAAG
TGGCCGACGTGAACGACAACGCTCCGGCGTTCGCGCAGCCCCAGTATACCGTGTTCGTGAAGGAGAACAA
CCCGCCAGGCTGCCACATCTTCACGGTGTCTGCACGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCC
TACTCGCTGGTGGAGCGGCGGGTGGGCGAGCGCCCGCTGTCGAGTTACGTTTCGGTGCACGCGGAGAGCG
GCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAGGAAGTGGAGCTGCTGCAGTTCCAGGTGAGCGCGCG
CGACGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAAC
GCGCCGGCGCTGCTGGTGCCTCGAGTGGGTGGCACCGGCGGCGCAGTGAGCGAGCTGGTGCCGAGGTCAG
TGGGTGCGGGCCACGTGGTGGCGAAGGTGCGCGCAGTGGACCCTGATTCGGGCTACAACGCTTGGCTTTC
GTATGAGCTGCAGCCAGCGCCTGGCAGTGCGCGCATCCCGTTCCGCGTGGGGCTGTACACAGGCGAGATC
AGCACAACACGCTCTCTGGATGAGACCGAAGCACCGCGCCACCGCCTTCTGGTGCTGGTGAAGGACCATG
GAGAGCCCCCGCTGACAGCCACAGCCACAGTGCTGGTGTCGCTGGTGGAAAGTGGCCAGGCGCCGAAGGC
CTCATCGCGGGCGTCGGCGGGCGCTGTGGGTCCCGAGGCTGCCCTGGTGGATGTCAACGTGTACCTGATC
ATCGCCATCTGTGCGGTGTCCAGCCTGCTGGTGCTCACGCTGCTGCTGTACACCGCGCTGCGGTGCTCGG
CGCAGCCCACCGAGGCCGTGTGCACACGGGGCAAGCCCACTCTGTTGTGCTCCAGCGCGGTGGGGAGCTG
GTCGTACTCGCAGCAGAGGAGACAGAGGGTGTGCTCTGGGGAAGCTCCACCCAAAACAGACCTCATGGCC
TTCAGTCCAAGCCTTCCTCAGGGTCCCACCTCTACAGACAACCCACGACAGCCCAACCCTGACTGGCGTT
ACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGG
TCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTG
TCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAAC
AATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCA
GGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAA
AAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACA
GTGACCAGTGA

Translation (936 aa):
MVYSRRGSLGSRLLLLWLLLAYWKAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKGR
GDLLEVNLQNGILFVNSRIDREELCRRRAECSIHLEVIVDRPLQVFHVEVAVKDINDNPPRFSRQEQRLF
ILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDLDVKTNEEETNFLELVLRKSLDREETQEHRLL
VIATDGGKPELTGTVQLLINVLDANDNAPEFDKSIYNVRLLENAPSGTLVIKLNASDADEGINKEIVYFF
SNLVLDDVKSKFIINSNTGEIKVNGELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMA
ITTLFLPVKEDAPLSTVIALISVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESVSVY
ELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPQYTVFVKENNPPGCHIFTVSARDADAQENALVS
YSLVERRVGERPLSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVFVLDENDN
APALLVPRVGGTGGAVSELVPRSVGAGHVVAKVRAVDPDSGYNAWLSYELQPAPGSARIPFRVGLYTGEI
STTRSLDETEAPRHRLLVLVKDHGEPPLTATATVLVSLVESGQAPKASSRASAGAVGPEAALVDVNVYLI
IAICAVSSLLVLTLLLYTALRCSAQPTEAVCTRGKPTLLCSSAVGSWSYSQQRRQRVCSGEAPPKTDLMA
FSPSLPQGPTSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEV
SPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKK
KKKKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH