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Report for CCDS23891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23891.1 Public Mus musculus 10 Ddx21 23 108 98 CCDS HistoryNCBI Gene:56200Re-query CCDS DB by CCDS ID:23891.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23891.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045866.8 ENSMUSP00000042691.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045866.8Link to Ensembl Protein Viewer:ENSMUSP00000042691.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045866Re-query CCDS DB by Protein ID:ENSMUSP00000042691
Original member Current member NCBI NM_019553.2 NP_062426.2 Accepted alive Link to Nucleotide Sequence:NM_019553.2Link to Protein Sequence:NP_062426.2Re-query CCDS DB by Nucleotide ID:NM_019553Re-query CCDS DB by Protein ID:NP_062426Link to BLAST:NP_062426.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062426.2 851 Q9JIK5 851 100% 0 0

Chromosomal Locations for CCDS 23891.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 62582350 62582607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62583054 62583098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62584631 62584765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62585525 62585684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62587464 62587537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62588004 62588123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62588657 62588818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62589778 62589927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62590621 62590766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62591817 62592002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62593010 62593127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62593962 62594140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62595036 62595111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62598232 62598891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62602128 62602214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2556 nt):
ATGCCGGGAAAACTCCGCAGTGGGGCCAAGTTGGGCTCAGACGGGGCCGAGGAGAGCATGGAGACGCTGC
CGAAGCCAAGCGAGAAGAAAACTAGAAAAGAGAAGACAAAATCAAAGACCGAAGAAGCAACAGAAGGAAT
GGAAGAGGCCGTTTCCTCCAAAGCAAAGAAAACAAACAAGAAAGGGCCTTCTGAGGATGATGTGGATCCC
CCTAAATCCAGGAAGGCCAAGAAGCAGGAGGAGGAGCCTCAAGACGACACTGCTTCTACAAGCAAAACCT
CCAAGAAGAAAAAGGAGCCCCTTGAGAAGCAAGCAGACTCTGAAACCAAAGAGATAATAACAGAGGAGCC
TTCCGAAGAAGAGGCAGACATGCCTAAGCCCAAGAAGATGAAGAAAGGGAAAGAAGCAAACGGAGATGCC
GGAGAGAAAAGCCCCAAGCTGAAGAATGGACTCTCCCAACCTTCCGAAGAAGAGGCAGACATTCCTAAGC
CCAAGAAGATGAAGAAAGGGAAAGAAGCAAACGGAGATGCTGGAGAGAAAAGCCCCAAGCTGAAGAATGG
ACTCTCCCAACCTTCCGAAGAAGAGGTAGACATTCCTAAGCCCAAGAAGATGAAGAAAGGGAAAGAAGCA
AGCGGAGATGCGGGAGAGAAAAGCCCCAGGCTGAAGGATGGACTCTCCCAACCTTCTGAACCGAAATCCA
ACTCCAGTGATGCTCCTGGTGAGGAAAGTAGTAGCGAGACAGAAAAGGAAATACCTGTGGAGCAGAAAGA
GGGAGCTTTCTCTAATTTTCCCATTTCTGAAGAGACTGTCAAGCTTCTCAAAGCTCGTGGGGTGAACTTC
CTGTTTCCTATACAAGCCAAGACCTTTCATCATGTGTACAGTGGGAAAGACTTAATTGCCCAGGCACGGA
CAGGAACCGGAAAGACATTCTCTTTTGCCATCCCTTTAATTGAGAAACTTCAAGGTGGGCTACAAGAGAG
GAAGAGAGGCCGAGCCCCTCAGGTGCTAGTCCTTGCACCCACAAGAGAATTAGCAAATCAAGTGAGCAAA
GACTTCAGCGACATCACCAAAAAGCTCTCTGTAGCTTGTTTTTATGGTGGAACACCCTACGGTGGTCAGA
TTGAACGAATGCGGAGTGGGATTGATATCCTGGTTGGGACCCCAGGTCGTATTAAAGACCACTTGCAGAA
TGGCAAGCTAGATCTCACCAAACTTAAACATGTTGTCCTGGATGAAGTCGACCAGATGTTGGATATGGGT
TTTGCTGATCAAGTGGAAGAAATTTTATGTGTTGCATACAAGAAAGATTCTGAAGACAACCCCCAAACAT
TGCTTTTCTCTGCAACTTGCCCTCATTGGGTGTTTAATGTTGCTAAGAAATACATGAAATCTACATACGA
ACAGGTGGACCTGATTGGTAAAAAGACTCAGAAAGCAGCTATAACTGTGGAGCACCTGGCGATTAAGTGT
CACTGGACAGAAAGGGCAGCGGTGATTGGGGATGTGATCCGAGTGTACAGTGGTCATCAAGGGCGCACGA
TCATCTTCTGTGAAACCAAGAAGGATGCCCAGGAGCTATCTCAGAACACGTGCATAAAGCAGGATGCCCA
GTCCTTACATGGCGACATTCCACAGAAGCAAAGGGAAATCACCCTGAAAGGTTTCCGAAATGGCAATTTT
GGAGTTTTGGTGGCAACCAATGTTGCTGCCCGTGGGTTAGACATCCCTGAGGTTGACTTGGTTGTTCAGA
GCTGCCCACCAAAGGATGTGGAGTCTTACATTCATCGTTCGGGGCGGACAGGCAGAGCTGGAAGGACAGG
AGTTTGCATCTGCTTTTACCAGAACAAAGAAGAGTACCAGTTAGCACAAGTGGAGCAGAAAGCGGGAATT
AAATTTAAACGGATAGGTGTTCCTTCTGCAACGGAAATAATAAAAGCCTCCAGCAAAGACGCCATCAGGC
TCTTGGATTCTGTGCCTCCCACTGCCATTAGCCATTTCAAGCAGTCAGCTGAGAAGCTGATTGAGGAGAA
GGGAGCTGTAGAGGCCTTGGCAGCTGCTCTGGCCCACATCTCAGGAGCCACATCAGTCGATCAGCGCTCC
CTGATCAACTCGCAAGCAGGCTTTGTGACCATGATCCTGCGGTGCTCCATTGAGATGCCCAACATCAGTT
ACGCTTGGAAAGAACTTAAGGAGCAGCTGGGCGAGAGCATCGATGCCAAAGTGAAGGGAATGGTCTTCCT
CAAAGGAAAACTGGGGGTTTGTTTTGATGTCCGAACTGAAGCAGTCACAGAAATACAGGAGAAGTGGCAT
GATTCGAGACGCTGGCAGCTCACCGTGGCCACCGAGCAGCCAGAGCTGGAGGGACCTCCAGACGGATATC
GAGGCCGCATGGGTCAGCGTGATGGCAGCCGTGGTGCTTTCAGAGGACAGCGGGGTGGAAGCAGGAACTT
CCGGGGACAGGGACAGCGAGGAGGAAGTAGAAACTTCCGAGGACAGCGACCAGGAGGTGGCAACAGAGGC
CAGAAGCGGAGTTTTAGTAAAGCGTTTGGTCAGTGA

Translation (851 aa):
MPGKLRSGAKLGSDGAEESMETLPKPSEKKTRKEKTKSKTEEATEGMEEAVSSKAKKTNKKGPSEDDVDP
PKSRKAKKQEEEPQDDTASTSKTSKKKKEPLEKQADSETKEIITEEPSEEEADMPKPKKMKKGKEANGDA
GEKSPKLKNGLSQPSEEEADIPKPKKMKKGKEANGDAGEKSPKLKNGLSQPSEEEVDIPKPKKMKKGKEA
SGDAGEKSPRLKDGLSQPSEPKSNSSDAPGEESSSETEKEIPVEQKEGAFSNFPISEETVKLLKARGVNF
LFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTRELANQVSK
DFSDITKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMG
FADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKC
HWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNF
GVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGI
KFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATSVDQRS
LINSQAGFVTMILRCSIEMPNISYAWKELKEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWH
DSRRWQLTVATEQPELEGPPDGYRGRMGQRDGSRGAFRGQRGGSRNFRGQGQRGGSRNFRGQRPGGGNRG
QKRSFSKAFGQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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