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Report for CCDS14899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14899.1 Public Mus musculus 1 Rev1 23 108 98 CCDS HistoryNCBI Gene:56210Re-query CCDS DB by CCDS ID:14899.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14899.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027251.11 ENSMUSP00000027251.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027251.11Link to Ensembl Protein Viewer:ENSMUSP00000027251.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027251Re-query CCDS DB by Protein ID:ENSMUSP00000027251
Original member Current member NCBI NM_019570.4 NP_062516.2 Accepted alive Link to Nucleotide Sequence:NM_019570.4Link to Protein Sequence:NP_062516.2Re-query CCDS DB by Nucleotide ID:NM_019570Re-query CCDS DB by Protein ID:NP_062516Link to BLAST:NP_062516.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062516.2 1249 Q920Q2 1249 100% 0 0

Chromosomal Locations for CCDS 14899.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 38053087 38053198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38053616 38053718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38053840 38053996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38054084 38054295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38054745 38054865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38055291 38055524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38056264 38056466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38056717 38056882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38057674 38057776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38059122 38059294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38063115 38063335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38067500 38067619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38071343 38071497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38074315 38074443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38079290 38079398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38083704 38083820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38085545 38085652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38087971 38088674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38092063 38092215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38098853 38099021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38107568 38107694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38108404 38108457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3750 nt):
ATGAGGCGAGGTGGATGGCGGAAGAGAACGGAGAATGATGGCTGGGAAAAATGGGGCGGGTACATGGCTG
CCAAGGTCCAGAAGCTGGAGGAGCAGTTCCGCACAGATGCTGCTAACCAGAAGGATGGGACGGCGTCTGC
AATATTTAGTGGAGTTGCCATCTATGTTAATGGATATACAGATCCTTCTGCGGAGGAATTGAGAAATCTA
ATGATGTTGCATGGAGGTCAATACCATGTGTATTATTCTAGATCCAAAACAACACACATTATTGCTACAA
ATCTTCCTAATGCCAAAATTAAAGAATTAAAGGGGGAAAAAGTAATACGACCAGAATGGATTGTGGAAAG
CATCAAAGCTGGGAGACTCTTGTCCTCTGCTCCCTATCAGCTCTACACCAAGCCGTCGGCTGCACAGAAG
AGTCTCAACTTCAATCCTGTGTGCAAACCTGAGGATCCTGGGCCAGGTCCAAGCAATAGAGCCAAACAGC
TCAACAACAGGGTAAATCACATAATTAAGAAGATTGAGACAGAAAGTGAAGTGAAAGCAAATGGACTGAG
CAGCTGGAATGAAGACGGTGTAAATGATGATTTTAGTTTTGAGGATCTGGAACATACATTTCCAGGAAGG
AAACAGAATGGAGTAATGCATCCCAGAGATACCGCTGTCATTTTTAATGGACACACCCATAGTTCAAATG
GTGCCTTAAAGACACAGGATTGCTTGGTGCCTGTGGGCAACAGTGTTGCTAGCAGGCTATCTTTAGACTC
CACCCAGGAGGAGAAGAGGGCAGAGAAGAGCAACGCGGACTTCAGAGACTGCACAGTGCAGCACTTGCAA
CACAGCACCAGAAGTGCAGATGCTTTGCGGAGTCCACACAGAACTAATTCTCTCTCACCATCTTTGCACA
GTAACACTAAAATCAATGGTGCTCACCACTCCACTGTTCAGGGGCCTTCAAGCACAAAAAGCACTTCTGT
TCTGACTCTTAGTAAAGTAGCGCCTTCAGTGCCATCCAAACCCTCGGACTGCAACTTCATTTCAGATTTC
TATTCTCGTTCAAGACTGCATCACATCTCAACATGGAAGTGTGAATTGACTGAGTTTGTCAATACCCTAC
AGAGACAAAGTAGTGGTATCTTTCCGGGAAGGGAAAAGTTAAAAAAAGTGAAAACAGGCAGGTCTTCTCT
TGTTGTAACTGACACAGGCACTATGTCAGTGTTGAGCTCACCCAGACATCAGAGCTGTGTGATGCACGTT
GATATGGACTGCTTCTTTGTATCAGTGGGTATACGAAATAGACCAGATCTCAAAGGAAAACCAGTGGCTG
TTACAAGTAACAGAGGCACGGGAACGGCGCCTTTGCGTCCTGGTGCTAACCCGCAGCTGGAATGGCAGTA
TTACCAGAATAGAGCCCTGAGAGGAAAAGCAGCAGATATACCAGATTCATCAGTATGGGAGAATCAAGAT
TCTACACAAACAAATGGAATTGATTCTGTTCTGTCAAAAGCTGAGATTGCTTCTTGTAGTTATGAAGCCA
GACAAGTTGGCATTAAGAACGGAATGTTTTTTGGATATGCTAAACAGCTGTGTCCTAATCTGCAAGCTGT
TCCGTATGATTTTCATGCATGCAGGGAAGTTGCCCAGGCAATGTATGAAACACTGGCCAGCTACACACAC
AGCATCGAGGCTGTCAGCTGCGATGAAGCACTGATTGACGTCACGGACATCCTTGCAGAGACGAAACTTT
CTCCTGAGGAGTTTGCAGCTGCCCTCCGTATTGAAATCAAAGACAAGACCAAATGTGCTGCCTCTGTTGG
AATTGGTTCTAATATTCTTCTTGCTAGAATGGCAACTAAGAAAGCAAAGCCAGATGGTCAGTACCACCTG
CAGCCCGACGAGGTAGACGATTTCATCCGAGGGCAGCTCGTCACTAACCTGCCGGGAGTTGGACGTTCAA
TGGAATCTAAGCTTGCATCTTTGGGGATTAAGACTTGTGGAGATTTGCAGTGTTTGACCATGGCAAAACT
CCAGAAAGAATTTGGCCCCAAGACAGGGCAGATGCTGTATAGGTTCTGCCGAGGTTTGGATGATAGACCT
GTTAGAACAGAGAAGGAACGAAAATCTGTTTCAGCCGAGATCAACTATGGAATAAGGTTCACCCAGCCCA
AAGAAGCAGAAGCTTTCCTTCTGAGTCTTTCAGAAGAAATTCAAAGACGACTTGAAGCTGCTGGCATGAA
GGGCAAACGCCTGACTCTGAAAATCATGGTGCGGAAGCCAGGGGCCCCTATAGAAACTGCAAAATTTGGA
GGCCATGGAATTTGTGATAACATCGCCAGGACTGTAACTCTGGACCAGGCAACAGATAGTGCAAAAATAA
TTGGGAAAGCCACTCTAAACATGTTTCATACAATGAAACTAAATATATCGGATATGAGAGGGGTTGGTAT
TCAAGTGAATCAGTTGGTTCCTGCTAATTCAAATCTTTCCACATGTTCAAGTCGTCCATCAGCTCAGTCA
AGCCTCTTCTCTGGTCGGCCACATTCTGTCCGTGATCTCTTCCAACTTCAGAAAGCCAAGAAACCCACAG
AAGAGGAACACAAGGAAGTATTTCTGGCTGCTGTGGATCTGGAAGTGTCCTCCACCTCTAGAGCTTGTGG
TTTATTGTCTCCGCTCTCTGCACATCTGGCAGCTAGTGTTAGTCCTGACACTAACAGTGGAGAGTGTTCC
AGAAAATGGAATGGCCTGCACTCTCCTGTCAGTGGACAGTCACGGCTGAACCTCAGTATAGAGGTCCCAT
CACCATCCCAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACTTGATCTCCGGGAACAAATAGAACAAGT
TTGTGCCGCTCAGCAGGGAGAGCCACGTGGAAAGAAGAAAGAACCAGTAAATGGCTGCAGTTCAGGGGTG
TTGCCACATCCTGTTGGAACAGTTTTATTACAGATCCCAGAGCCTCAAGAACCTTGTAATAGTGACAGCA
AGATTAGTGTAATTGCCCTTCCAGCATTCTCACAAGTGGACCCTGATGTCTTTGCTGCCCTTCCTGCTGA
GCTTCAAAAGGAGCTGAAAGCAGCATATGATCAAAGACAAAGGCAGGGAGAGGACACTACTCATCAGCAG
CCAACCAGTACATCTGTGCCAAAGAATCCTTTACTTCAGCTAAAGCCACCAGCAATGAAAGACAAGAGGA
ACAAGAGGAAGAACCTCATTGGTTCTCCCAGAAAGAGTCCTTTGAAAAATAAGCTGCTTAGCAGTCCTGC
AAAAACTCTGCCAGGGGCATATGGAAGCCCCCAGAAGTTAATGGATGGTTTTCTACAACATGAAGGAATG
GCTTCAGAGAGACCCCTGGAAGAAGTCTCGGCTTCTACCCCTGGTGCACAGGACCTATCTAGTTTACTGC
CAGGCCAGAGCAGCTGTTTTAGACCAGCAGCACCCAACCTAGCTGGAGCTGTGGAATTCAGTGATGTGAA
GACCTTGCTCAAAGAGTGGATCACTACTATCTCAGATCCGATGGAAGAAGACATCCTGCAGGTTGTGAGA
TACTGCACTGACCTCATAGAGGAGAAAGACTTGGAAAAATTGGATCTGGTTATAAAATACATGAAAAGGT
TGATGCAGCAGTCGGTGGAGTCTGTATGGAACATGGCGTTTGACTTTATTCTTGACAATGTTCAGGTGGT
TTTACAGCAGACTTATGGAAGCACACTGAAAGTGACCTGA

Translation (1249 aa):
MRRGGWRKRTENDGWEKWGGYMAAKVQKLEEQFRTDAANQKDGTASAIFSGVAIYVNGYTDPSAEELRNL
MMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVESIKAGRLLSSAPYQLYTKPSAAQK
SLNFNPVCKPEDPGPGPSNRAKQLNNRVNHIIKKIETESEVKANGLSSWNEDGVNDDFSFEDLEHTFPGR
KQNGVMHPRDTAVIFNGHTHSSNGALKTQDCLVPVGNSVASRLSLDSTQEEKRAEKSNADFRDCTVQHLQ
HSTRSADALRSPHRTNSLSPSLHSNTKINGAHHSTVQGPSSTKSTSVLTLSKVAPSVPSKPSDCNFISDF
YSRSRLHHISTWKCELTEFVNTLQRQSSGIFPGREKLKKVKTGRSSLVVTDTGTMSVLSSPRHQSCVMHV
DMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGTAPLRPGANPQLEWQYYQNRALRGKAADIPDSSVWENQD
STQTNGIDSVLSKAEIASCSYEARQVGIKNGMFFGYAKQLCPNLQAVPYDFHACREVAQAMYETLASYTH
SIEAVSCDEALIDVTDILAETKLSPEEFAAALRIEIKDKTKCAASVGIGSNILLARMATKKAKPDGQYHL
QPDEVDDFIRGQLVTNLPGVGRSMESKLASLGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRP
VRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKPGAPIETAKFG
GHGICDNIARTVTLDQATDSAKIIGKATLNMFHTMKLNISDMRGVGIQVNQLVPANSNLSTCSSRPSAQS
SLFSGRPHSVRDLFQLQKAKKPTEEEHKEVFLAAVDLEVSSTSRACGLLSPLSAHLAASVSPDTNSGECS
RKWNGLHSPVSGQSRLNLSIEVPSPSQIDQSVLEALPLDLREQIEQVCAAQQGEPRGKKKEPVNGCSSGV
LPHPVGTVLLQIPEPQEPCNSDSKISVIALPAFSQVDPDVFAALPAELQKELKAAYDQRQRQGEDTTHQQ
PTSTSVPKNPLLQLKPPAMKDKRNKRKNLIGSPRKSPLKNKLLSSPAKTLPGAYGSPQKLMDGFLQHEGM
ASERPLEEVSASTPGAQDLSSLLPGQSSCFRPAAPNLAGAVEFSDVKTLLKEWITTISDPMEEDILQVVR
YCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQTYGSTLKVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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