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Report for CCDS22500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22500.1 Public Mus musculus 8 Dnaja2 23 108 98 CCDS HistoryNCBI Gene:56445Re-query CCDS DB by CCDS ID:22500.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22500.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034138.6 ENSMUSP00000034138.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034138.6Link to Ensembl Protein Viewer:ENSMUSP00000034138.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034138Re-query CCDS DB by Protein ID:ENSMUSP00000034138
Original member Current member NCBI NM_019794.5 NP_062768.1 Accepted alive Link to Nucleotide Sequence:NM_019794.5Link to Protein Sequence:NP_062768.1Re-query CCDS DB by Nucleotide ID:NM_019794Re-query CCDS DB by Protein ID:NP_062768Link to BLAST:NP_062768.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062768.1 412 Q9QYJ0 412 100% 0 0

Chromosomal Locations for CCDS 22500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 85539216 85539407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85540050 85540177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85540308 85540452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85546513 85546709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85548564 85548697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85548882 85548962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85553187 85553410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85553917 85553976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85555170 85555247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGGCGAACGTGGCCGACACGAAGCTGTACGACATCCTGGGCGTCCCTCCCGGCGCTAGCGAGAACGAGC
TGAAGAAGGCATACCGAAAGTTAGCCAAAGAATACCACCCTGATAAGAATCCAAATGCTGGAGACAAATT
TAAAGAAATAAGTTTTGCATATGAAGTATTGTCAAATCCAGAGAAGCGAGAGCTGTATGACAGATATGGA
GAACAAGGCCTACGGGAAGGCAGCGGCGGAGGCGGTGGCATGGATGATATCTTCTCACATATTTTTGGTG
GAGGATTGTTTGGCTTTATGGGCAATCAGAGTAGAAGTCGAAATGGCAGAAGAAGAGGCGAGGACATGAT
GCATCCACTAAAAGTATCTTTAGAAGACCTGTACAATGGCAAGACAACCAAACTACAACTTAGCAAGAAT
GTGCTCTGTAGTGCATGCAGTGGCCAAGGTGGGAAGTCTGGAGCTGTTCAGAAATGCAGCGCTTGTCGGG
GTCGAGGTGTGCGCATTATGATCAGACAGCTGGCTCCAGGAATGGTGCAGCAGATGCAGTCCGTGTGCTC
CGACTGTAATGGAGAAGGGGAGGTCATCAATGAAAAAGACCGCTGTAAAAAATGTGAAGGGAAGAAGGTA
ATCAAAGAAGTCAAGATTCTGGAAGTCCATGTAGACAAAGGCATGAAACATGGACAGAGGATTACGTTCA
CTGGGGAAGCAGACCAGGCTCCAGGAGTGGAACCTGGAGATATTGTTCTTTTGCTACAGGAAAAAGAACA
TGAGGTGTTCCAGAGAGATGGGAATGATTTGCATATGACATATAAGATAGGACTTGTTGAAGCTTTATGT
GGATTTCAGTTCACATTTAAACATCTTGATGCTCGTCAGATTGTGGTGAAATACCCCCCTGGCAAAGTAA
TTGAACCAGGATGTGTTCGTGTTGTTCGAGGTGAAGGAATGCCACAGTATCGTAATCCCTTTGAAAAGGG
TGATCTCTACATAAAGTTTGATGTACAGTTTCCTGAGAATAACTGGATCAACCCAGACAAACTTTCTGAA
TTAGAAGATCTCCTGCCATCTAGACCAGAAGTTCCTAATGTTATTGGAGAGACAGAAGAAGTGGAGCTTC
AGGAATTTGATAGCACTCGAGGCTCTGGCGGTGGTCAGAGACGTGAAGCCTATAATGATAGCTCTGATGA
AGAAAGTAGCAGCCATCATGGACCTGGAGTGCAGTGTGCCCATCAGTAA

Translation (412 aa):
MANVADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYG
EQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKN
VLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKV
IKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALC
GFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSE
LEDLLPSRPEVPNVIGETEEVELQEFDSTRGSGGGQRREAYNDSSDEESSSHHGPGVQCAHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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