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Report for CCDS12611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12611.1 Public Homo sapiens 19 PSG3 24 110 108 CCDS HistoryNCBI Gene:5671Re-query CCDS DB by CCDS ID:12611.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 12611.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327495.10 ENSP00000332215.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327495.10Link to Ensembl Protein Viewer:ENSP00000332215.5Re-query CCDS DB by Nucleotide ID:ENST00000327495Re-query CCDS DB by Protein ID:ENSP00000332215
Original member Current member EBI ENST00000614582.1 ENSP00000480223.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614582.1Link to Ensembl Protein Viewer:ENSP00000480223.1Re-query CCDS DB by Nucleotide ID:ENST00000614582Re-query CCDS DB by Protein ID:ENSP00000480223
Original member Current member NCBI NM_021016.4 NP_066296.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021016.4Link to Protein Sequence:NP_066296.2Re-query CCDS DB by Nucleotide ID:NM_021016Re-query CCDS DB by Protein ID:NP_066296Link to BLAST:NP_066296.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066296.2 428 Q16557 428 100% 0 0

Chromosomal Locations for CCDS 12611.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42723982 42724025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42729123 42729377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42729778 42730056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42732784 42733062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42738724 42739089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42740321 42740384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGGGGCCCCTCTCAGCCCCTCCCTGCACACAGCGCATCACCTGGAAGGGGCTCCTGCTCACAGCATTAC
TTTTAAACTTCTGGAACTTGCCTACCACTGCCCAAGTCACGATTGAAGCCGAGCCAACCAAAGTTTCCAA
GGGGAAGGACGTTCTTCTACTTGTCCACAATTTGCCCCAGAATCTTGCTGGCTACATCTGGTACAAAGGG
CAAATGAAGGACCTCTACCATTACATTACATCATACGTAGTAGATGGTCAAATAATTATATATGGGCCTG
CATACAGTGGACGAGAAACAGTATATTCCAATGCATCCCTGCTGATCCAGAATGTCACCCGGGAGGACGC
AGGATCCTACACCTTACACATCGTAAAGCGAGGTGATGGGACTAGAGGAGAAACTGGACATTTCACCTTC
ACCTTATACCTGGAGACTCCCAAGCCCTCCATCTCCAGCAGCAACTTATACCCCAGGGAGGACATGGAGG
CTGTGAGCTTAACCTGTGATCCTGAGACTCCGGACGCAAGCTACCTGTGGTGGATGAATGGTCAGAGCCT
CCCTATGACTCACAGCTTGCAGTTGTCCAAAAACAAAAGGACCCTCTTTCTATTTGGTGTCACAAAGTAC
ACTGCAGGACCCTATGAATGTGAAATACGGAACCCAGTGAGTGCCAGCCGCAGTGACCCAGTCACCCTGA
ATCTCCTCCCGAAGCTGCCCAAGCCCTACATCACCATCAACAACTTAAACCCCAGGGAGAATAAGGATGT
CTTAGCCTTCACCTGTGAACCTAAGAGTGAGAACTACACCTACATTTGGTGGCTAAATGGTCAGAGCCTC
CCGGTCAGTCCCAGGGTAAAGCGACCCATTGAAAACAGGATCCTCATTCTACCCAGTGTCACGAGAAATG
AAACAGGACCCTATCAATGTGAAATACAGGACCGATATGGTGGCATCCGCAGTTACCCAGTCACCCTGAA
TGTCCTCTATGGTCCAGACCTCCCCAGAATTTACCCTTCATTCACCTATTACCATTCAGGAGAAAACCTC
TACTTGTCCTGCTTCGCGGACTCTAACCCACCAGCAGAATATTCTTGGACAATTAATGGGAAGTTTCAGC
TATCAGGACAAAAGCTCTTTATCCCCCAGATTACTACAAAGCATAGCGGGCTCTATGCTTGCTCTGTTCG
TAACTCAGCCACTGGCATGGAAAGCTCCAAATCCATGACAGTCAAAGTCTCTGCTCCTTCAGGAACAGGA
CATCTTCCTGGCCTTAATCCATTATAG

Translation (428 aa):
MGPLSAPPCTQRITWKGLLLTALLLNFWNLPTTAQVTIEAEPTKVSKGKDVLLLVHNLPQNLAGYIWYKG
QMKDLYHYITSYVVDGQIIIYGPAYSGRETVYSNASLLIQNVTREDAGSYTLHIVKRGDGTRGETGHFTF
TLYLETPKPSISSSNLYPREDMEAVSLTCDPETPDASYLWWMNGQSLPMTHSLQLSKNKRTLFLFGVTKY
TAGPYECEIRNPVSASRSDPVTLNLLPKLPKPYITINNLNPRENKDVLAFTCEPKSENYTYIWWLNGQSL
PVSPRVKRPIENRILILPSVTRNETGPYQCEIQDRYGGIRSYPVTLNVLYGPDLPRIYPSFTYYHSGENL
YLSCFADSNPPAEYSWTINGKFQLSGQKLFIPQITTKHSGLYACSVRNSATGMESSKSMTVKVSAPSGTG
HLPGLNPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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