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Report for CCDS4719.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4719.1 Public Homo sapiens 6 CLIC1 24 110 108 CCDS HistoryNCBI Gene:1192Re-query CCDS DB by CCDS ID:4719.1Re-query CCDS DB by GeneID:1192See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4719.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375779.6 ENSP00000364934.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375779.6Link to Ensembl Protein Viewer:ENSP00000364934.2Re-query CCDS DB by Nucleotide ID:ENST00000375779Re-query CCDS DB by Protein ID:ENSP00000364934
Original member Current member EBI ENST00000375780.6 ENSP00000364935.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375780.6Link to Ensembl Protein Viewer:ENSP00000364935.2Re-query CCDS DB by Nucleotide ID:ENST00000375780Re-query CCDS DB by Protein ID:ENSP00000364935
Original member Current member EBI ENST00000375784.8 ENSP00000364940.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375784.8Link to Ensembl Protein Viewer:ENSP00000364940.3Re-query CCDS DB by Nucleotide ID:ENST00000375784Re-query CCDS DB by Protein ID:ENSP00000364940
Original member Current member EBI ENST00000395892.5 ENSP00000379229.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395892.5Link to Ensembl Protein Viewer:ENSP00000379229.1Re-query CCDS DB by Nucleotide ID:ENST00000395892Re-query CCDS DB by Protein ID:ENSP00000379229
Original member Current member EBI ENST00000616760.1 ENSP00000479808.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616760.1Link to Ensembl Protein Viewer:ENSP00000479808.1Re-query CCDS DB by Nucleotide ID:ENST00000616760Re-query CCDS DB by Protein ID:ENSP00000479808
Original member Current member NCBI NM_001287593.1 NP_001274522.1 Accepted alive Link to Nucleotide Sequence:NM_001287593.1Link to Protein Sequence:NP_001274522.1Re-query CCDS DB by Nucleotide ID:NM_001287593Re-query CCDS DB by Protein ID:NP_001274522Link to BLAST:NP_001274522.1
Original member Current member NCBI NM_001287594.3 NP_001274523.1 Accepted alive Link to Nucleotide Sequence:NM_001287594.3Link to Protein Sequence:NP_001274523.1Re-query CCDS DB by Nucleotide ID:NM_001287594Re-query CCDS DB by Protein ID:NP_001274523Link to BLAST:NP_001274523.1
Original member Current member NCBI NM_001288.6 NP_001279.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001288.6Link to Protein Sequence:NP_001279.2Re-query CCDS DB by Nucleotide ID:NM_001288Re-query CCDS DB by Protein ID:NP_001279Link to BLAST:NP_001279.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274522.1 241 O00299 241 100% 0 0
NP_001274523.1 241 O00299 241 100% 0 0
NP_001279.2 241 O00299 241 100% 0 0

Chromosomal Locations for CCDS 4719.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31730842 31731003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31732217 31732398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31733566 31733672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31733836 31733961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31734154 31734263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31736262 31736300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGGCTGAAGAACAACCGCAGGTCGAATTGTTCGTGAAGGCTGGCAGTGATGGGGCCAAGATTGGGAACT
GCCCATTCTCCCAGAGACTGTTCATGGTACTGTGGCTCAAGGGAGTCACCTTCAATGTTACCACCGTTGA
CACCAAAAGGCGGACCGAGACAGTGCAGAAGCTGTGCCCAGGGGGGCAGCTCCCATTCCTGCTGTATGGC
ACTGAAGTGCACACAGACACCAACAAGATTGAGGAATTTCTGGAGGCAGTGCTGTGCCCTCCCAGGTACC
CCAAGCTGGCAGCTCTGAACCCTGAGTCCAACACAGCTGGGCTGGACATATTTGCCAAATTTTCTGCCTA
CATCAAGAATTCAAACCCAGCACTCAATGACAATCTGGAGAAGGGACTCCTGAAAGCCCTGAAGGTTTTA
GACAATTACTTAACATCCCCCCTCCCAGAAGAAGTGGATGAAACCAGTGCTGAAGATGAAGGTGTCTCTC
AGAGGAAGTTTTTGGATGGCAACGAGCTCACCCTGGCTGACTGCAACCTGTTGCCAAAGTTACACATAGT
ACAGGTGGTGTGTAAGAAGTACCGGGGATTCACCATCCCCGAGGCCTTCCGGGGAGTGCATCGGTACTTG
AGCAATGCCTACGCCCGGGAAGAATTCGCTTCCACCTGTCCAGATGATGAGGAGATCGAGCTCGCCTATG
AGCAAGTGGCAAAGGCCCTCAAATAA

Translation (241 aa):
MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYG
TEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVL
DNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYL
SNAYAREEFASTCPDDEEIELAYEQVAKALK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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