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Report for CCDS9412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9412.1 Public Homo sapiens 13 CYSLTR2 24 110 108 CCDS HistoryNCBI Gene:57105Re-query CCDS DB by CCDS ID:9412.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 9412.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282018.4 ENSP00000282018.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000282018.4Link to Ensembl Protein Viewer:ENSP00000282018.3Re-query CCDS DB by Nucleotide ID:ENST00000282018Re-query CCDS DB by Protein ID:ENSP00000282018
Original member Current member EBI ENST00000614739.4 ENSP00000477930.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614739.4Link to Ensembl Protein Viewer:ENSP00000477930.1Re-query CCDS DB by Nucleotide ID:ENST00000614739Re-query CCDS DB by Protein ID:ENSP00000477930
Original member Current member EBI ENST00000682523.1 ENSP00000508181.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682523.1Link to Ensembl Protein Viewer:ENSP00000508181.1Re-query CCDS DB by Nucleotide ID:ENST00000682523Re-query CCDS DB by Protein ID:ENSP00000508181
Original member Current member NCBI NM_001308465.3 NP_001295394.1 Accepted alive Link to Nucleotide Sequence:NM_001308465.3Link to Protein Sequence:NP_001295394.1Re-query CCDS DB by Nucleotide ID:NM_001308465Re-query CCDS DB by Protein ID:NP_001295394Link to BLAST:NP_001295394.1
Original member Current member NCBI NM_001308467.3 NP_001295396.1 Accepted alive Link to Nucleotide Sequence:NM_001308467.3Link to Protein Sequence:NP_001295396.1Re-query CCDS DB by Nucleotide ID:NM_001308467Re-query CCDS DB by Protein ID:NP_001295396Link to BLAST:NP_001295396.1
Original member Current member NCBI NM_001308468.3 NP_001295397.1 Accepted alive Link to Nucleotide Sequence:NM_001308468.3Link to Protein Sequence:NP_001295397.1Re-query CCDS DB by Nucleotide ID:NM_001308468Re-query CCDS DB by Protein ID:NP_001295397Link to BLAST:NP_001295397.1
Original member Current member NCBI NM_001308469.3 NP_001295398.1 Accepted alive Link to Nucleotide Sequence:NM_001308469.3Link to Protein Sequence:NP_001295398.1Re-query CCDS DB by Nucleotide ID:NM_001308469Re-query CCDS DB by Protein ID:NP_001295398Link to BLAST:NP_001295398.1
Original member Current member NCBI NM_001308470.3 NP_001295399.1 Accepted alive Link to Nucleotide Sequence:NM_001308470.3Link to Protein Sequence:NP_001295399.1Re-query CCDS DB by Nucleotide ID:NM_001308470Re-query CCDS DB by Protein ID:NP_001295399Link to BLAST:NP_001295399.1
Original member Current member NCBI NM_001308471.3 NP_001295400.1 Accepted alive Link to Nucleotide Sequence:NM_001308471.3Link to Protein Sequence:NP_001295400.1Re-query CCDS DB by Nucleotide ID:NM_001308471Re-query CCDS DB by Protein ID:NP_001295400Link to BLAST:NP_001295400.1
Original member Current member NCBI NM_001308476.3 NP_001295405.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001308476.3Link to Protein Sequence:NP_001295405.1Re-query CCDS DB by Nucleotide ID:NM_001308476Re-query CCDS DB by Protein ID:NP_001295405Link to BLAST:NP_001295405.1
Original member Current member NCBI NM_001387012.1 NP_001373941.1 Accepted alive Link to Nucleotide Sequence:NM_001387012.1Link to Protein Sequence:NP_001373941.1Re-query CCDS DB by Nucleotide ID:NM_001387012Re-query CCDS DB by Protein ID:NP_001373941Link to BLAST:NP_001373941.1
Original member Current member NCBI NM_001387013.1 NP_001373942.1 Accepted alive Link to Nucleotide Sequence:NM_001387013.1Link to Protein Sequence:NP_001373942.1Re-query CCDS DB by Nucleotide ID:NM_001387013Re-query CCDS DB by Protein ID:NP_001373942Link to BLAST:NP_001373942.1
Original member Current member NCBI NM_001387014.1 NP_001373943.1 Accepted alive Link to Nucleotide Sequence:NM_001387014.1Link to Protein Sequence:NP_001373943.1Re-query CCDS DB by Nucleotide ID:NM_001387014Re-query CCDS DB by Protein ID:NP_001373943Link to BLAST:NP_001373943.1
Original member Current member NCBI NM_020377.5 NP_065110.1 Accepted alive Link to Nucleotide Sequence:NM_020377.5Link to Protein Sequence:NP_065110.1Re-query CCDS DB by Nucleotide ID:NM_020377Re-query CCDS DB by Protein ID:NP_065110Link to BLAST:NP_065110.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295394.1 346 Q9NS75 346 100% 0 0
NP_001295396.1 346 Q9NS75 346 100% 0 0
NP_001295397.1 346 Q9NS75 346 100% 0 0
NP_001295398.1 346 Q9NS75 346 100% 0 0
NP_001295399.1 346 Q9NS75 346 100% 0 0
NP_001295400.1 346 Q9NS75 346 100% 0 0
NP_001295405.1 346 Q9NS75 346 100% 0 0
NP_001373941.1 346 Q9NS75 346 100% 0 0
NP_001373942.1 346 Q9NS75 346 100% 0 0
NP_001373943.1 346 Q9NS75 346 100% 0 0
NP_065110.1 346 Q9NS75 346 100% 0 0

Chromosomal Locations for CCDS 9412.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 48706818 48707858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGAGAGAAAATTTATGTCCTTGCAACCATCCATCTCCGTATCAGAAATGGAACCAAATGGCACCTTCA
GCAATAACAACAGCAGGAACTGCACAATTGAAAACTTCAAGAGAGAATTTTTCCCAATTGTATATCTGAT
AATATTTTTCTGGGGAGTCTTGGGAAATGGGTTGTCCATATATGTTTTCCTGCAGCCTTATAAGAAGTCC
ACATCTGTGAACGTTTTCATGCTAAATCTGGCCATTTCAGATCTCCTGTTCATAAGCACGCTTCCCTTCA
GGGCTGACTATTATCTTAGAGGCTCCAATTGGATATTTGGAGACCTGGCCTGCAGGATTATGTCTTATTC
CTTGTATGTCAACATGTACAGCAGTATTTATTTCCTGACCGTGCTGAGTGTTGTGCGTTTCCTGGCAATG
GTTCACCCCTTTCGGCTTCTGCATGTCACCAGCATCAGGAGTGCCTGGATCCTCTGTGGGATCATATGGA
TCCTTATCATGGCTTCCTCAATAATGCTCCTGGACAGTGGCTCTGAGCAGAACGGCAGTGTCACATCATG
CTTAGAGCTGAATCTCTATAAAATTGCTAAGCTGCAGACCATGAACTATATTGCCTTGGTGGTGGGCTGC
CTGCTGCCATTTTTCACACTCAGCATCTGTTATCTGCTGATCATTCGGGTTCTGTTAAAAGTGGAGGTCC
CAGAATCGGGGCTGCGGGTTTCTCACAGGAAGGCACTGACCACCATCATCATCACCTTGATCATCTTCTT
CTTGTGTTTCCTGCCCTATCACACACTGAGGACCGTCCACTTGACGACATGGAAAGTGGGTTTATGCAAA
GACAGACTGCATAAAGCTTTGGTTATCACACTGGCCTTGGCAGCAGCCAATGCCTGCTTCAATCCTCTGC
TCTATTACTTTGCTGGGGAGAATTTTAAGGACAGACTAAAGTCTGCACTCAGAAAAGGCCATCCACAGAA
GGCAAAGACAAAGTGTGTTTTCCCTGTTAGTGTGTGGTTGAGAAAGGAAACAAGAGTATAA

Translation (346 aa):
MERKFMSLQPSISVSEMEPNGTFSNNNSRNCTIENFKREFFPIVYLIIFFWGVLGNGLSIYVFLQPYKKS
TSVNVFMLNLAISDLLFISTLPFRADYYLRGSNWIFGDLACRIMSYSLYVNMYSSIYFLTVLSVVRFLAM
VHPFRLLHVTSIRSAWILCGIIWILIMASSIMLLDSGSEQNGSVTSCLELNLYKIAKLQTMNYIALVVGC
LLPFFTLSICYLLIIRVLLKVEVPESGLRVSHRKALTTIIITLIIFFLCFLPYHTLRTVHLTTWKVGLCK
DRLHKALVITLALAAANACFNPLLYYFAGENFKDRLKSALRKGHPQKAKTKCVFPVSVWLRKETRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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