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Report for CCDS24451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24451.1 Public Mus musculus 11 C1d 23 108 98 CCDS HistoryNCBI Gene:57316Re-query CCDS DB by CCDS ID:24451.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24451.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000594.8 ENSMUSP00000000594.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000594.8Link to Ensembl Protein Viewer:ENSMUSP00000000594.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000000594Re-query CCDS DB by Protein ID:ENSMUSP00000000594
Original member Current member NCBI NM_001330649.1 NP_001317578.1 Accepted alive Link to Nucleotide Sequence:NM_001330649.1Link to Protein Sequence:NP_001317578.1Re-query CCDS DB by Nucleotide ID:NM_001330649Re-query CCDS DB by Protein ID:NP_001317578Link to BLAST:NP_001317578.1
Original member Current member NCBI NM_020558.4 NP_065583.2 Accepted alive Link to Nucleotide Sequence:NM_020558.4Link to Protein Sequence:NP_065583.2Re-query CCDS DB by Nucleotide ID:NM_020558Re-query CCDS DB by Protein ID:NP_065583Link to BLAST:NP_065583.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317578.1 141 O35473 141 100% 0 0
NP_065583.2 141 O35473 141 100% 0 0

Chromosomal Locations for CCDS 24451.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 17262657 17262794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17263609 17263675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17263951 17264006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17266531 17266695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGGCAGGTGAAGAAATGAATGAAGATTATCCCGTAGAAATTCACGAGTCTTTAACAGCCCTGGAGAGCT
CCCTGGGTGCTGTGGACGACATGCTGAAGACCATGATGGCTGTTTCTAGAAACGAGTTGTTGCAGAAGTT
GGACCCATTGGAACAAGCAAAGGTGGATTTAGTTTCTGCATACACCTTAAATTCAATGTTTTGGGTTTAT
TTGGCAACTCAAGGAGTTAATCCCAAAGAGCATCCAGTGAAGCAGGAACTGGAAAGAATCAGAGTCTACA
TGAACAGAGTTAAAGAAATAACAGACAAGAAGAAGGCTGCCAAGCTGGACAGAGGTGCTGCTTCGAGATT
TGTCAAGAACGCACTCTGGGAACCCAAAGCAAAAAGCACACCAAAAGTGGCTAATAAAGGGAAAAGCAAA
CACTAA

Translation (141 aa):
MAGEEMNEDYPVEIHESLTALESSLGAVDDMLKTMMAVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY
LATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAAKLDRGAASRFVKNALWEPKAKSTPKVANKGKSK
H


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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