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Report for CCDS26378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26378.1 Public Mus musculus 13 Gmnn 23 108 98 CCDS HistoryNCBI Gene:57441Re-query CCDS DB by CCDS ID:26378.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26378.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006898.9 ENSMUSP00000006898.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006898.9Link to Ensembl Protein Viewer:ENSMUSP00000006898.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000006898Re-query CCDS DB by Protein ID:ENSMUSP00000006898
Original member Current member EBI ENSMUST00000110382.8 ENSMUSP00000106011.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110382.8Link to Ensembl Protein Viewer:ENSMUSP00000106011.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110382Re-query CCDS DB by Protein ID:ENSMUSP00000106011
Original member Current member NCBI NM_020567.2 NP_065592.1 Accepted alive Link to Nucleotide Sequence:NM_020567.2Link to Protein Sequence:NP_065592.1Re-query CCDS DB by Nucleotide ID:NM_020567Re-query CCDS DB by Protein ID:NP_065592Link to BLAST:NP_065592.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065592.1 206 O88513 206 100% 0 0

Chromosomal Locations for CCDS 26378.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24752069 24752230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24753348 24753458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24753658 24753740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24756600 24756735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24757596 24757673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24760160 24760210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGAATCTCAGTATGAAGCAGAAGCAGGAGGGAGCCCAAGAGAATGTGAAGAATAGTCCTGTCCCAAGGA
GAACGCTGAAGATGATCCAGCCTTCTGCAGATGGATCTCTTGTTGGCAGAGAAAATGAGTTGCCAAAAGG
CTTGTTCAAAAGGAAGCTTTGGGATGACCAGCTAGCATCTCAGACTTCAAGCTGTGGTCCAGAAGCTAAT
GAAAATAAGGATGTTGGAGACCTCACCCAGGAAGCCTTTGATCTTATAAGTAAAGAGAACCCATCTTCTC
AGTATTGGAAAGAAGTGGCAGAGCAGCGGAGGAAAGCTCTCTACGAAGCGCTGAAAGAGAATGAGAAACT
TCATAAAGAAATTGAACAAAAGGACAGTGAGATTGCCCGCCTGAGAAAGGAGAATAAAGACTTGGCAGAA
GTAGCTGAGCACGTGCAGTACATGGCGGAGGTAATCGAGAGGCTGAGTAATGAACCTCTGGATAACTTTG
AATCACCGGATAGTCAGGAATTTGATTCTGAAGAAGAAGCTGTTGAGTATTCAGAACTGGAAGACTCAGG
AGCTGGGACGTGTGCTGAAGAGACTGTGTCTTCCTCCACGGATGCTAGGCCGTGTACATGA

Translation (206 aa):
MNLSMKQKQEGAQENVKNSPVPRRTLKMIQPSADGSLVGRENELPKGLFKRKLWDDQLASQTSSCGPEAN
ENKDVGDLTQEAFDLISKENPSSQYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE
VAEHVQYMAEVIERLSNEPLDNFESPDSQEFDSEEEAVEYSELEDSGAGTCAEETVSSSTDARPCT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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