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Report for CCDS34260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34260.1 Public Homo sapiens 5 KCTD16 24 110 108 CCDS HistoryNCBI Gene:57528Re-query CCDS DB by CCDS ID:34260.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34260.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000512467.6 ENSP00000424151.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000512467.6Link to Ensembl Protein Viewer:ENSP00000424151.1Re-query CCDS DB by Nucleotide ID:ENST00000512467Re-query CCDS DB by Protein ID:ENSP00000424151
Original member Current member EBI ENST00000507359.3 ENSP00000426548.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507359.3Link to Ensembl Protein Viewer:ENSP00000426548.1Re-query CCDS DB by Nucleotide ID:ENST00000507359Re-query CCDS DB by Protein ID:ENSP00000426548
Original member Current member NCBI NM_001370486.1 NP_001357415.1 Accepted alive Link to Nucleotide Sequence:NM_001370486.1Link to Protein Sequence:NP_001357415.1Re-query CCDS DB by Nucleotide ID:NM_001370486Re-query CCDS DB by Protein ID:NP_001357415Link to BLAST:NP_001357415.1
Original member Current member NCBI NM_001370487.1 NP_001357416.1 Accepted alive Link to Nucleotide Sequence:NM_001370487.1Link to Protein Sequence:NP_001357416.1Re-query CCDS DB by Nucleotide ID:NM_001370487Re-query CCDS DB by Protein ID:NP_001357416Link to BLAST:NP_001357416.1
Original member Current member NCBI NM_020768.4 NP_065819.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020768.4Link to Protein Sequence:NP_065819.1Re-query CCDS DB by Nucleotide ID:NM_020768Re-query CCDS DB by Protein ID:NP_065819Link to BLAST:NP_065819.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357415.1 428 Q68DU8 428 100% 0 0
NP_001357416.1 428 Q68DU8 428 100% 0 0
NP_065819.1 428 Q68DU8 428 100% 0 0

Chromosomal Locations for CCDS 34260.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 144206715 144207546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144473660 144474114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGGCTCTGAGTGGAAACTGTAGTCGTTATTATCCTCGAGAACAAGGGTCCGCAGTTCCCAACTCCTTCC
CTGAGGTGGTAGAGCTGAATGTCGGGGGTCAAGTTTATTTTACTCGCCATTCCACATTGATAAGCATCCC
TCATTCCCTCCTGTGGAAAATGTTTTCCCCAAAGAGAGACACGGCTAATGATCTAGCCAAGGACTCCAAG
GGAAGGTTTTTCATTGACAGAGATGGATTCTTGTTCCGTTATATTCTGGACTATCTCAGGGACAGGCAGG
TGGTCCTGCCTGATCACTTTCCAGAAAAAGGAAGACTGAAAAGGGAAGCTGAATACTTCCAGCTCCCAGA
CTTGGTCAAACTCCTGACCCCCGATGAAATCAAGCAAAGCCCAGATGAATTCTGCCACAGTGACTTTGAA
GATGCCTCCCAAGGAAGCGACACAAGAATCTGCCCCCCTTCCTCCCTGCTCCCTGCCGACCGCAAGTGGG
GTTTCATTACTGTGGGTTACAGAGGATCCTGCACCTTGGGCAGAGAGGGACAGGCAGATGCCAAGTTTCG
GAGAGTTCCCCGGATTTTGGTTTGTGGAAGGATTTCCTTGGCAAAAGAAGTCTTTGGAGAAACTTTGAAT
GAAAGCAGAGACCCTGATCGAGCCCCAGAAAGATACACCTCCAGATTTTATCTCAAATTCAAGCACCTGG
AAAGGGCTTTTGATATGTTGTCAGAGTGTGGATTCCACATGGTGGCCTGTAACTCATCGGTGACAGCATC
TTTCATCAACCAATATACAGATGACAAGATCTGGTCAAGCTACACTGAATATGTCTTCTACCGTGAGCCT
TCCAGATGGTCACCCTCACACTGCGATTGCTGCTGCAAGAATGGCAAAGGTGACAAAGAAGGGGAGAGCG
GCACGTCTTGCAATGACCTCTCCACATCTAGCTGCGACAGCCAGTCTGAGGCCAGCTCTCCCCAGGAGAC
GGTCATCTGTGGTCCCGTGACACGCCAGACCAACATCCAGACTCTGGACCGTCCCATCAAGAAGGGCCCT
GTCCAGCTGATCCAACAGTCAGAGATGCGGCGGAAAAGCGACTTACTCCGGACTCTGACTTCAGGCTCCA
GGGAATCGAACATGAGCAGCAAAAAAAAAGCTGTTAAAGAAAAGCTCTCAATTGAGGAGGAGCTGGAGAA
ATGTATCCAGGATTTCCTAAAAATCAAAATTCCAGATCGGTTTCCTGAGAGAAAACATCCTTGGCAATCT
GAACTTTTAAGGAAGTATCATCTATAA

Translation (428 aa):
MALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPKRDTANDLAKDSK
GRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTPDEIKQSPDEFCHSDFE
DASQGSDTRICPPSSLLPADRKWGFITVGYRGSCTLGREGQADAKFRRVPRILVCGRISLAKEVFGETLN
ESRDPDRAPERYTSRFYLKFKHLERAFDMLSECGFHMVACNSSVTASFINQYTDDKIWSSYTEYVFYREP
SRWSPSHCDCCCKNGKGDKEGESGTSCNDLSTSSCDSQSEASSPQETVICGPVTRQTNIQTLDRPIKKGP
VQLIQQSEMRRKSDLLRTLTSGSRESNMSSKKKAVKEKLSIEEELEKCIQDFLKIKIPDRFPERKHPWQS
ELLRKYHL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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