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Report for CCDS79641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79641.1 Public Mus musculus 18 Scgb3a2 23 108 98 CCDS HistoryNCBI Gene:117158Re-query CCDS DB by CCDS ID:79641.1Re-query CCDS DB by GeneID:117158See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79641.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000189750.1 ENSMUSP00000140375.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189750.1Link to Ensembl Protein Viewer:ENSMUSP00000140375.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189750Re-query CCDS DB by Protein ID:ENSMUSP00000140375
Original member Current member NCBI NM_001289643.1 NP_001276572.1 Accepted alive Link to Nucleotide Sequence:NM_001289643.1Link to Protein Sequence:NP_001276572.1Re-query CCDS DB by Nucleotide ID:NM_001289643Re-query CCDS DB by Protein ID:NP_001276572Link to BLAST:NP_001276572.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276572.1 113 Q920H1-3 113 100% 0 0

Chromosomal Locations for CCDS 79641.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 43764418 43764472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43766704 43766966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43767231 43767254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGAAGCTGGTATCTATCTTTCTGCTGGTGACCATTGGTATTTGTGGTTATTCTGCCACTGCCCTTCTCA
TCAACCGTCTCCCTGTTGTTGACAAATTACCTGTACCTTTGGACGACATTATTCCCTCATTTGATCCCTT
GAAGATGCTTCTGAAAACCCTGGGCATTTCTGTAGAACATCTGGTGACAGGACTGAAGAAGTGTGTGGAC
GAGCTGGGACCAGAGGCTTCCGAGGCCGTGAAGAAGCTTCTGGTAATTATAATTTGTTCTTATTTCCCTG
GGAGAAGCCTTTGCTACGTGAACAACCTCCCATCATTTGAGGCTCTTTCACACCTGGTATAA

Translation (113 aa):
MKLVSIFLLVTIGICGYSATALLINRLPVVDKLPVPLDDIIPSFDPLKMLLKTLGISVEHLVTGLKKCVD
ELGPEASEAVKKLLVIIICSYFPGRSLCYVNNLPSFEALSHLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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