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Report for CCDS20296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20296.1 Public Mus musculus 6 Fbxo41 23 108 98 CCDS HistoryNCBI Gene:330369Re-query CCDS DB by CCDS ID:20296.1Re-query CCDS DB by GeneID:330369See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20296.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161078.7 ENSMUSP00000124524.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161078.7Link to Ensembl Protein Viewer:ENSMUSP00000124524.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161078Re-query CCDS DB by Protein ID:ENSMUSP00000124524
Original member Current member EBI ENSMUST00000161546.1 ENSMUSP00000124754.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161546.1Link to Ensembl Protein Viewer:ENSMUSP00000124754.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161546Re-query CCDS DB by Protein ID:ENSMUSP00000124754
Original member Current member EBI ENSMUST00000159062.7 ENSMUSP00000125671.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159062.7Link to Ensembl Protein Viewer:ENSMUSP00000125671.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159062Re-query CCDS DB by Protein ID:ENSMUSP00000125671
Original member Current member NCBI NM_001001160.3 NP_001001160.1 Accepted alive Link to Nucleotide Sequence:NM_001001160.3Link to Protein Sequence:NP_001001160.1Re-query CCDS DB by Nucleotide ID:NM_001001160Re-query CCDS DB by Protein ID:NP_001001160Link to BLAST:NP_001001160.1
Original member Current member NCBI NM_001289674.1 NP_001276603.1 Accepted alive Link to Nucleotide Sequence:NM_001289674.1Link to Protein Sequence:NP_001276603.1Re-query CCDS DB by Nucleotide ID:NM_001289674Re-query CCDS DB by Protein ID:NP_001276603Link to BLAST:NP_001276603.1
Original member Current member NCBI NM_001289675.1 NP_001276604.1 Accepted alive Link to Nucleotide Sequence:NM_001289675.1Link to Protein Sequence:NP_001276604.1Re-query CCDS DB by Nucleotide ID:NM_001289675Re-query CCDS DB by Protein ID:NP_001276604Link to BLAST:NP_001276604.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001160.1 873 Q6NS60 873 100% 0 0
NP_001276603.1 873 Q6NS60 873 100% 0 0
NP_001276604.1 873 Q6NS60 873 100% 0 0

Chromosomal Locations for CCDS 20296.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85473026 85473088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85473201 85473316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85475080 85475238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85475394 85475512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85477568 85477663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85477856 85478008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85478106 85478221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85478401 85478642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85479628 85479986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85480220 85480293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85480767 85480992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85483826 85484724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2622 nt):
ATGGCCTCGCTGGACCTACCGTACCGCTGCCCGCGCTGCGGGGAGCATAAGCGCTTCCGGAGCCTATCGT
CGCTGCGCGCGCACCTGGAGTACAGCCACACCTACGAGACGCTCTACATCCTTTCCAAGACCAACAGCAT
CTGCGACGGCGCGGCCGCCGCTGCAGCCGCTGCCGCCGCAGCCTCTGGATTCCCGCTGGCGCCTGAGCCC
GCCGCCTTGCTGGCTGTCCCCGGGGCCCGGCGTGAGGTCTTTGAGAGCACGTCCTTCCAGGGCAAGGAAC
AGGCGACCGGGCCCTCGCCCGCGGGGCCGCACCTGCTGCACCATCATCACCACCACGCGCCACTGGCGCA
CTTTCCCGCTGACCTGGTGCCCGCTAGCCTGCCCTGCGAGGAGCTGGCTGAGCCGGGGCTCGTGCCCGCT
GCGCGCTATGCGCTACGCGAAATCGAAATCCCACTCGGCGAGCTGTTTGCGCGCAAGTCCGTGGCATCCT
CTGCCTGCTCGACGCCGCCACCCGGACCTGGCCCTGGTCCTTGTTCCGGGCCCTCCTCTGCATCGCCGGC
GTCGCCATCACCTGCGGACGTCGCCTACGAAGAGGGCCTGGCACGCCTTAAGATCCGCGCCCTGGAGAAG
CTGGAGGTGGACCGGAGACTAGAGCGGCTGAGCGAGGAGGTGGAGCAGAAGATCGCGGGCCAGGTGGGTC
GGCTACAGGCGGAGCTGGAGCGCAAGGCAGCAGAGCTAGAAACTGCAAGACAGGAGAGCGCGCGCCTGGG
ACGCGAGAAGGAGGAGCTGGAGGAGCGCGCCTCTGAGCTCTCACGCCAAGTGGACGTGAGCGTGGAACTG
CTGGCTTCACTCAAGCAGGACCTGGTGCATAAGGAACAGGAGCTGAGCCGCAAGCAGCAGGAGGTGGTGC
AGATCGACCAGTTCCTGAAGGAGACGGCAGCTCGGGAGGCCAGTGCCAAGCTGCGGCTGCAACAGTTCAT
CGAGGAGCTCCTGGAGCGTGCAGACAGGGCCGAGCGCCAGTTGCAGGTCATCAGCAGCAGCTGTGGCAGC
ACACCCAGTGCCAGCCTGGGCAGAGGAGGTGGGGGCAGTGCCTCGGGGCCTGGGGTGAGAGGCCCCGGCA
GAATGCGAGAACATCATGCAGGCTCAGCTGTGCCAAGCACATACGCCGTATCACGGCATGGCTCCTCTCC
CAGCACAGGGGCCTCCAGTCGTGTGCCAGCTGCATCCCAGAGCTCAGGCTGCTATGACAGTGACAGTCTG
GAGCTGCCCCGGCCAGAGGAAGGGCCCTCGGAGGACAGTGGCCCTGGGGGCTTGGGTTCACGGGCCCAGG
CTACCAACGGTGGTTCAGAGCGGTCCCAGGCCCCTCGTAGTTCAGGCCTAAGACGACAGGCCATCCAGAA
CTGGCAACGCCGACCTCGTCGTCACAGCACCGAGGGGGAGGAGGGTGACGTTTCGGATGTGGGCTCCCGA
ACTACTGAGTCAGAGGCTGAAGGACCCTCAGATGTCCCACGCCCTGGACCTGCTGTGGCTGGCCCCTTGA
ACAGCTGCCGGCTCTCTGCACGTCCTGAAGGAGGCAGCGGGCGAGGCCGTCGGGTGGAGAGAGGTAGCCC
CTCACGCTCCAATGAGGTCATCAGCCCAGAAATCCTCAAGATGCGAGCTGCCCTCTTCTGTATCTTCACC
TACCTGGATACCCGGACACTGCTCCATGCAGCAGAGGTCTGTCGGGACTGGCGCTTTGTGGCCCGCCATC
CCGCTGTCTGGACGAGAGTGCTACTTGAGAATGCCCGAGTCTGTTCCAAGTTCCTGGCGATGTTGGCTCA
GTGGTGCACCCAGGCTCACTCGTTAACATTACAGAACCTGAAGCCCCGGCAGCGGGGGAAGAAGGAAAGC
AAGGAGGAGTATGCCCGCAGCACCCGGGGCTGCCTTGAAGCAGGGCTGGAGTCCCTGCTGAAGGCAGCTG
GTGGGAACCTGCTGATCCTGCGAATCTCCCACTGCCCCAACATCCTCACTGACCGGTCCCTCTGGCTGGC
CAGCTGCTACTGCCGTGCCCTGCAGGCTGTCACCTACAGGAGTGCCACGGACCCCGTCGGCCATGAGGTG
ATCTGGGCCCTGGGTGCAGGCTGCAGAGACATTGTCTCCCTCCAGGTGGCGCCACTTCACCCCTGCCAGC
AGCCCACCCGGTTCAGCAACCGTTGCCTGCAGATGATTGGACGCTGTTGGCCCCACCTCCGGGCCCTGGG
CGTAGGTGGTGCCGGCTGTGGGGTACAGGGCCTGGCATCACTTGCAAGAAACTGTATGCGGCTGCAGGTC
CTGGAGCTGGACCACGTGTCAGAGATTACCCAGGAGGTGGCGGCTGAGGTCTGCCGGGAAGGCCTGAAGG
GACTGGAGATGCTGGTGCTCACAGCCACCCCTGTCACCCCTAAGGCCCTGCTTCATTTTAACAGCATCTG
CCGGAACCTTAAATCCATTGTGGTGCAGATTGGGATTGCAGATTACTTCAAAGAGCCCAGCAGTCCCGAG
GCCCAGAAGCTGTTTGAGGACATGGTGACAAAACTCCAGGCCCTGCGTCGGAGGCCTGGCTTCTCGAAGA
TTCTGCACATCAAGGTAGAAGGTGGTTGCTAA

Translation (873 aa):
MASLDLPYRCPRCGEHKRFRSLSSLRAHLEYSHTYETLYILSKTNSICDGAAAAAAAAAAASGFPLAPEP
AALLAVPGARREVFESTSFQGKEQATGPSPAGPHLLHHHHHHAPLAHFPADLVPASLPCEELAEPGLVPA
ARYALREIEIPLGELFARKSVASSACSTPPPGPGPGPCSGPSSASPASPSPADVAYEEGLARLKIRALEK
LEVDRRLERLSEEVEQKIAGQVGRLQAELERKAAELETARQESARLGREKEELEERASELSRQVDVSVEL
LASLKQDLVHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAERQLQVISSSCGS
TPSASLGRGGGGSASGPGVRGPGRMREHHAGSAVPSTYAVSRHGSSPSTGASSRVPAASQSSGCYDSDSL
ELPRPEEGPSEDSGPGGLGSRAQATNGGSERSQAPRSSGLRRQAIQNWQRRPRRHSTEGEEGDVSDVGSR
TTESEAEGPSDVPRPGPAVAGPLNSCRLSARPEGGSGRGRRVERGSPSRSNEVISPEILKMRAALFCIFT
YLDTRTLLHAAEVCRDWRFVARHPAVWTRVLLENARVCSKFLAMLAQWCTQAHSLTLQNLKPRQRGKKES
KEEYARSTRGCLEAGLESLLKAAGGNLLILRISHCPNILTDRSLWLASCYCRALQAVTYRSATDPVGHEV
IWALGAGCRDIVSLQVAPLHPCQQPTRFSNRCLQMIGRCWPHLRALGVGGAGCGVQGLASLARNCMRLQV
LELDHVSEITQEVAAEVCREGLKGLEMLVLTATPVTPKALLHFNSICRNLKSIVVQIGIADYFKEPSSPE
AQKLFEDMVTKLQALRRRPGFSKILHIKVEGGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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