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Report for CCDS16885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16885.1 Public Mus musculus 2 6820408C15Rik 23 108 98 CCDS HistoryNCBI Gene:228778Re-query CCDS DB by CCDS ID:16885.1Re-query CCDS DB by GeneID:228778See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039961.11 ENSMUSP00000037024.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039961.11Link to Ensembl Protein Viewer:ENSMUSP00000037024.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039961Re-query CCDS DB by Protein ID:ENSMUSP00000037024
Original member Current member NCBI NM_177656.4 NP_808324.1 Accepted alive Link to Nucleotide Sequence:NM_177656.4Link to Protein Sequence:NP_808324.1Re-query CCDS DB by Nucleotide ID:NM_177656Re-query CCDS DB by Protein ID:NP_808324Link to BLAST:NP_808324.1

Chromosomal Locations for CCDS 16885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152427755 152427765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152427941 152427995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152428925 152429024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152434036 152434148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152437485 152437643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152439610 152439709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152440765 152440922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152441000 152441101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152441216 152441302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152442374 152442492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152444073 152444133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGCACAGAAACAAACCTCGAGACCTCAATTCTCAGGGAACAAGTTTCAAGTACCTGTGAGATTGGGGC
CA
GAGAAGAACTTGAAGCCATCTACTCTGCCTCCCCTCCGACAAGTCAAAGGCCGCAACAAAAGCAAGAC
G
AAGAATCTGAATAAAATCCAACCAGTACAGTCCCAGGTCTCTGTAGAGATGGCAAACTCAACAAAGACT
TCA
GGAGGACTTCGAAGAAGGGACCAAACGCACCACGGGAAAGTGCAGGCCAAGGTCCGGCTGATGAGGT
CG
ATGCTTCGAAACCAGCGGACCTCGCTCCAGGAGCTCTACAGCCACGAAGGCTACCTCAGCAAGCTCAA
C
AAGGAGCTGATCAAGGCCATCCTGGACACTGAGGACAGCGTGGCCTTGAGCGTGCGTGAAATGCTACAG
CAG
CAGAGTATCCTCGGGAGTATCATCGACATCTTGGAATATTCAAACAAGAAGCGGGTGCAGCAGCTGA
GG
TCTGAGCTCCAGGAGTGGAAAGAGAAGGAGGAGAGCAAGACAAACAGCCTTCAGAGGGAGGTGGATCA
G
CTGAACTCCGAGATCCAGAAGGCCAGCGAGGAGGTGAATTTCCTGGACACCTACATGGATCACGAGTAT
CCC
GTCAAGTTGGTTCAGATCGCCAGCCACATACGCCAGGTGCAGCAGGCAAAGGACAACCAGCAGGATG
AG
CTGGACAACCTTAGCGAGATGCGGGAAACCATCCTGGCACTTTTTTCCAACGTAATTCAAGAGAAGAA
G
AAGAAAATCCTGAAGTCTCTGGTCGTGAATACTCAGAAACCCCATGAGAACATACTGCTGCTGAAGACC
CTG
GACAGACGGCGACTGCAGAGGTGCATGGTCTTGTTCAGAGAGCTTATTGAACAGATGAAAGAAGAGA
TT
CCCATCCTACTCTCAGAGGTGGAGCAGATGTGTGCAGAGCTCTGGAACCCGAGAGAGGCCGTTTATAA
G
GATGTTCTGCTTCAGAGACCCAAGTGCACCCCAGACATGGCTGTTGAGCTCAACATTCCTGTGCAGGAG
CCA
TTCCCCTTCTAG


Translation (354 aa):
MAQKQTSRPQFSGNKFQVPVRLGPEKNLKPSTLPPLRQVKGRNKSKTKNLNKIQPVQSQVSVEMANSTKT
S
GGLRRRDQTHHGKVQAKVRLMR
SMLRNQRTSLQELYSHEGYLSKLNKELIKAILDTEDSVALSVREMLQ
Q
QSILG
SIIDILEYSNKKRVQQLRSELQEWKEKEESKTNSLQREVDQLNSEIQKASEEVNFLDTYMDHEY
P
VKLVQIASHIRQVQQAKDNQQ
DELDNLSEMRETILALFSNVIQEKKKKILKSLVVNTQKPHENILLLKT
L
DRRRLQRCMVLFRE
LIEQMKEEIPILLSEVEQMCAELWNPREAVYKDVLLQRPKCTPDMAVELNIPVQE
P
FPF




Links Key
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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