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Report for CCDS37974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37974.1 Public Mus musculus 19 Noc3l 23 108 98 CCDS HistoryNCBI Gene:57753Re-query CCDS DB by CCDS ID:37974.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025963.7 ENSMUSP00000025963.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025963.7Link to Ensembl Protein Viewer:ENSMUSP00000025963.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025963Re-query CCDS DB by Protein ID:ENSMUSP00000025963
Original member Current member NCBI NM_021315.2 NP_067290.2 Accepted alive Link to Nucleotide Sequence:NM_021315.2Link to Protein Sequence:NP_067290.2Re-query CCDS DB by Nucleotide ID:NM_021315Re-query CCDS DB by Protein ID:NP_067290Link to BLAST:NP_067290.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067290.2 807 Q8VI84 807 100% 0 0

Chromosomal Locations for CCDS 37974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 38789545 38789697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38790288 38790372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38792701 38792798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38794105 38794233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38794972 38795153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38795486 38795557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38795638 38795701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38795797 38795869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38798898 38798998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38799310 38799390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38804399 38804530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38807087 38807215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38807526 38807701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38810008 38810101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38810298 38810459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38812344 38812474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38814081 38814134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38814686 38814843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38815583 38815715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38817938 38818145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38819093 38819101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2424 nt):
ATGAAGGCGAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAAC
TTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAG
GAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAA
CGGCCAGTTAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACG
AGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTAG
TGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACT
CTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTC
AGGCTCGGGAGAAGCCGGTCACTGACGTGCAGCAAGAAGAGGAGGCTGAGGAAGAGCTGGAAGATGAGGA
AGAGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTG
CAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCATATTAAAA
AACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGT
TATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCA
GAAAAATCTACCAAGATTCGTAAAGAAACCCAGAAGTTAAGAGAATTTGAAGAAGGCCTGGTTAGCCAAT
ACAAATTTTATTTGGAAAATCTGGAGCAAATAGTTAAAGACTGGAAGCAAAGGAAGCTGAAGAAGAGCAA
TGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTG
GCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAA
AACCGGTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTC
TCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAGATGTTA
AAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCA
AAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAGTGGAAGAAAGCAGA
AGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGCAC
ACCGAGACTCTGAATATTGTGTTTGTGACCTACTTCAGAATACTGAAGAAGGCCCAGAAGTCACCTCTTC
TGCCAGCGGTTCTAGAAGGCCTTGCCAAGTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATT
AGTGGTTCTTCATACCCTCATTGAGTCTGGGGAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACT
GCTTTTCATATTCTTTCTGGACAAGGTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCT
ACAAGACACTGTTCACATTACATGCAGGTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGA
TGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGT
ACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCATA
CTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGA
GGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGGAGACATTACCAT
CCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGC
CCGAGCTGAGCCGAAGATCTGCAGTTGAACTTTTTGAGACTTACAGCATGGCAGCAATGACATTCAATCC
GCCTGTTGAATCTTCACACTCCAAAAGGAAGGATAAATTTTTACCAGGAGACTCATTTTTGAATGAAGAT
TTAAATCAACTAATCAAAAGATACTGTAATGAAGCTGCTCCTGAGACACCGCTGGATTTCGCCAAGTGTT
TGGAAAGCTCATCCCGGCAGTACAGAGTGAATGGACTGTCTTAG

Translation (807 aa):
MKARRNKKQVPSFRKLIKTSKVKLENKLKNKQFKQQSTIKKYRKEQRKLRQAVKDAVSKKPIPLEDPKSK
RPVKRMEREEDEEEEALPLDMMDEDDLQLMKDLGQKASFLTRDLSSSEPVHIKKRKHESVIEKYEKVPRT
LQTAPEKELIHLLPIKDKSGIIPQAREKPVTDVQQEEEAEEELEDEEEVIEDPRKELTIEEHVIERKKKL
QDKKIQIAALASAILSDPESHIKKLKELRSMLMEQDPDVAVTVRKLVIISLMELFKDITPSYKIRPLTEA
EKSTKIRKETQKLREFEEGLVSQYKFYLENLEQIVKDWKQRKLKKSNVVSLKAYKGLAEVAVKSLCELLV
ALPHFNFHNNIIVLIVPLMNDGSKPVSEMCCEAVKKLFKQDKLGQASLGVIKVISGFVKGRNYEVRPEML
KTFLCLRIKEVEVKKDTEDINKPKRFMTFKEKRKTLSRMQRKWKKAEEKLERELREAEASESTEKKLKLH
TETLNIVFVTYFRILKKAQKSPLLPAVLEGLAKFAHLINVEFFDDLLVVLHTLIESGELSYQESLHCVQT
AFHILSGQGDVLNIDPMKFYTHLYKTLFTLHAGATNDGIEIVLHCLDVMLSKRRKQVSHQRALAFIKRLC
TLALQVLPNSSIGLLATTRILMHTFPRTDLLLDNESQGSGVFLPELEEPEYCNAQNTALWELHTLRRHYH
PIVRRFAAHLLAGAPSEGSEALKPELSRRSAVELFETYSMAAMTFNPPVESSHSKRKDKFLPGDSFLNED
LNQLIKRYCNEAAPETPLDFAKCLESSSRQYRVNGLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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